| Add(const T t) | bio::Final< CLASS > | inline |
| As() | bio::Final< CLASS > | inline |
| As() const | bio::Final< CLASS > | inline |
| AsAtom() | bio::Final< CLASS > | inline |
| AsAtom() const | bio::Final< CLASS > | inline |
| AsLogWriter() const | bio::Final< CLASS > | inline |
| AsWave() | bio::Final< CLASS > | inline |
| AsWave() const | bio::Final< CLASS > | inline |
| Attenuate(Pointer< const physical::Wave > other) | bio::Final< CLASS > | inline |
| BreakBond(T toDisassociate, BondType type=bond_type::Unknown()) | bio::Final< CLASS > | inline |
| Clear() | bio::Final< CLASS > | inline |
| Clone() const | bio::Final< CLASS > | inline |
| Demodulate() | bio::Final< CLASS > | inline |
| Demodulate() const | bio::Final< CLASS > | inline |
| Disable() | bio::Final< CLASS > | inline |
| Disattenuate(Pointer< const physical::Wave > other) | bio::Final< CLASS > | inline |
| Enable() | bio::Final< CLASS > | inline |
| Final() | bio::Final< CLASS > | inline |
| Final(const Name &name) | bio::Final< CLASS > | inlineexplicit |
| Final(const Id &id) | bio::Final< CLASS > | inlineexplicit |
| ForEach(Pointer< chemical::ExcitationBase > excitation) | bio::Final< CLASS > | inline |
| FormBond(T toBond, BondType type=bond_type::Unknown()) | bio::Final< CLASS > | inline |
| GetAll() | bio::Final< CLASS > | inline |
| GetAll() const | bio::Final< CLASS > | inline |
| GetAllBonds() | bio::Final< CLASS > | inline |
| GetAllBonds() const | bio::Final< CLASS > | inline |
| GetById(const Id &id) | bio::Final< CLASS > | inline |
| GetById(const Id &id) const | bio::Final< CLASS > | inline |
| GetByName(const Name &name) | bio::Final< CLASS > | inline |
| GetByName(const Name &name) const | bio::Final< CLASS > | inline |
| GetCount() const | bio::Final< CLASS > | inline |
| GetEnvironment() | bio::Final< CLASS > | inline |
| GetEnvironment() const | bio::Final< CLASS > | inline |
| GetId() const | bio::Final< CLASS > | inline |
| GetName() const | bio::Final< CLASS > | inline |
| GetNumMatching(Pointer< const Container > other) const | bio::Final< CLASS > | inline |
| GetOrCreateById(const Id &id) | bio::Final< CLASS > | inline |
| GetOrCreateByName(const Name &name) | bio::Final< CLASS > | inline |
| GetPerspective() const | bio::Final< CLASS > | inline |
| GetProperties() const | bio::Final< CLASS > | inline |
| GetStringFrom(std::string separator=", ") | bio::Final< CLASS > | inline |
| Has(T content) const | bio::Final< CLASS > | inline |
| HasAll(Pointer< const Container > contents) const | bio::Final< CLASS > | inline |
| Import(Pointer< const chemical::UnorderedMotif< T > > other) | bio::Final< CLASS > | inline |
| Import(Pointer< const chemical::LinearMotif< T > > other) | bio::Final< CLASS > | inline |
| Import(const ::bio::Arrangement< T > &other) | bio::Final< CLASS > | inline |
| ImportAll(Pointer< const physical::Wave > other) | bio::Final< CLASS > | inline |
| Insert(T toAdd, const Position position=BOTTOM, const Id optionalPositionArg=0, const bool transferSubContents=false) | bio::Final< CLASS > | inline |
| IsEnabled() const | bio::Final< CLASS > | inline |
| IsId(const Id &id) const | bio::Final< CLASS > | inline |
| IsName(const Name &name) const | bio::Final< CLASS > | inline |
| IsNameInsensitive(const Name &name) const | bio::Final< CLASS > | inline |
| Log(::bio::LogLevel level, const char *format, va_list args) const | bio::Final< CLASS > | inline |
| Log() | bio::Final< CLASS > | inline |
| Log(LogLevel level, const char *format,...) const | bio::Final< CLASS > | inline |
| MakeWave(bool force=false) | bio::Final< CLASS > | inline |
| Modulate(Pointer< physical::Wave > signal) | bio::Final< CLASS > | inline |
| mT | bio::TransparentWrapper< CLASS > | |
| operator AS() | bio::Final< CLASS > | inline |
| operator CLASS() | bio::TransparentWrapper< CLASS > | inline |
| operator Id() const | bio::Final< CLASS > | inline |
| operator Pointer< physical::Wave >() | bio::Final< CLASS > | inline |
| operator!=(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| operator!=(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator*(Pointer< physical::Wave > signal) | bio::Final< CLASS > | inline |
| operator*() | bio::Final< CLASS > | inline |
| operator*() const | bio::Final< CLASS > | inline |
| TransparentWrapper< CLASS >::operator*(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| TransparentWrapper< CLASS >::operator*(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator*=(const CLASS &t) | bio::TransparentWrapper< CLASS > | inline |
| operator*=(const TransparentWrapper &other) | bio::TransparentWrapper< CLASS > | inline |
| operator+(Pointer< const physical::Wave > other) | bio::Final< CLASS > | inline |
| TransparentWrapper< CLASS >::operator+(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| TransparentWrapper< CLASS >::operator+(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator++() | bio::TransparentWrapper< CLASS > | inline |
| operator++(int) | bio::TransparentWrapper< CLASS > | inline |
| operator+=(const CLASS &t) | bio::TransparentWrapper< CLASS > | inline |
| operator+=(const TransparentWrapper &other) | bio::TransparentWrapper< CLASS > | inline |
| operator-(Pointer< const physical::Wave > other) | bio::Final< CLASS > | inline |
| TransparentWrapper< CLASS >::operator-(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| TransparentWrapper< CLASS >::operator-(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator--() | bio::TransparentWrapper< CLASS > | inline |
| operator--(int) | bio::TransparentWrapper< CLASS > | inline |
| operator-=(const CLASS &t) | bio::TransparentWrapper< CLASS > | inline |
| operator-=(const TransparentWrapper &other) | bio::TransparentWrapper< CLASS > | inline |
| operator->() | bio::TransparentWrapper< CLASS > | inline |
| operator->() const | bio::TransparentWrapper< CLASS > | inline |
| operator/(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| operator/(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator/=(const CLASS &t) | bio::TransparentWrapper< CLASS > | inline |
| operator/=(const TransparentWrapper &other) | bio::TransparentWrapper< CLASS > | inline |
| operator<(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| operator<(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator<<(std::ostream &out, const TransparentWrapper &t) | bio::TransparentWrapper< CLASS > | inline |
| operator<=(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| operator<=(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator=(const CLASS &t) | bio::TransparentWrapper< CLASS > | inline |
| operator=(const TransparentWrapper< CLASS > &other) | bio::TransparentWrapper< CLASS > | inline |
| operator==(const Id id) const | bio::Final< CLASS > | inline |
| operator==(const Name &name) const | bio::Final< CLASS > | inline |
| operator==(const physical::Identifiable< Id > &other) const | bio::Final< CLASS > | inline |
| TransparentWrapper< CLASS >::operator==(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| TransparentWrapper< CLASS >::operator==(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator>(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| operator>(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator>=(const CLASS &t) const | bio::TransparentWrapper< CLASS > | inline |
| operator>=(const TransparentWrapper &other) const | bio::TransparentWrapper< CLASS > | inline |
| operator|(Pointer< physical::Symmetry > symmetry) | bio::Final< CLASS > | inline |
| RegisterProperties(const Properties &properties) | bio::Final< CLASS > | inline |
| Reify(Pointer< const physical::Symmetry > symmetry) | bio::Final< CLASS > | inline |
| Remove(const T t) | bio::Final< CLASS > | inline |
| SetEnvironment(Pointer< ENVIRONMENT > environment) | bio::Final< CLASS > | inline |
| SetId(const Id &id) | bio::Final< CLASS > | inline |
| SetName(const Name &name) | bio::Final< CLASS > | inline |
| SetPerspective(Pointer< physical::Perspective< Id > > perspective) | bio::Final< CLASS > | inline |
| Spin() const | bio::Final< CLASS > | inline |
| TransparentWrapper(CLASS t) | bio::TransparentWrapper< CLASS > | inline |
| TransparentWrapper(const TransparentWrapper< CLASS > &other) | bio::TransparentWrapper< CLASS > | inline |
| Type typedef | bio::TransparentWrapper< CLASS > | |
| ~Final() | bio::Final< CLASS > | inline |
| ~TransparentWrapper() | bio::TransparentWrapper< CLASS > | inline |
