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bio::chemical::Class< T > Member List

This is the complete list of members for bio::chemical::Class< T >, including all inherited members.

As()bio::chemical::Atominline
As() constbio::chemical::Atominline
AsAtom()bio::physical::Waveinlinevirtual
AsAtom() constbio::physical::Waveinlinevirtual
AsBonded()bio::chemical::Atominline
AsBonded() constbio::chemical::Atominline
AsBondedQuantum()bio::chemical::Atominline
AsBondedQuantum() constbio::chemical::Atominline
bio::AsWave()bio::physical::Class< T >inlinevirtual
bio::AsWave() constbio::physical::Class< T >inlinevirtual
Identifiable< StandardDimension >::AsWave()bio::physical::Class< Identifiable< StandardDimension > >inlinevirtual
Identifiable< StandardDimension >::AsWave() constbio::physical::Class< Identifiable< StandardDimension > >inlinevirtual
bio::log::Writer::bio::AsWave()bio::physical::Class< Filterable >inlinevirtual
bio::log::Writer::AsWave() constbio::physical::Class< Filterable >inlinevirtual
bio::log::Writer::Class< Writer >::AsWave()bio::physical::Class< Writer >inlinevirtual
bio::Class< Writer >::AsWave() constbio::physical::Class< Writer >inlinevirtual
bio::chemical::Atom::AsWave()bio::physical::Class< Atom >inlinevirtual
bio::chemical::Atom::AsWave() constbio::physical::Class< Atom >inlinevirtual
Atom(const Atom &other)bio::chemical::Atomexplicit
bio::Attenuate(const Wave *other)bio::physical::Wavevirtual
bio::chemical::Atom::Attenuate(const Wave *other)bio::chemical::Atomvirtual
BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, T) Class(T *objectbio::chemical::Class< T >
Identifiable< StandardDimension >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Identifiable< StandardDimension >) explicit Identifiable(Perspective< StandardDimension > *perspectivebio::physical::Identifiable< StandardDimension >
bio::log::Writer::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Writer) Writer()bio::log::Writer
bio::physical::Filterable::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Filterable) Filterable()bio::physical::Filterable
bio::chemical::Atom::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Atom) explicit Atom()bio::chemical::Atom
BreakBond(T toDisassociate, BondType type=bond_type::Unknown())bio::chemical::Atominline
BreakBondImplementation(Wave *toDisassociate, AtomicNumber id, BondType type)bio::chemical::Atomprotectedvirtual
bio::Class(T *object, Symmetry *symmetry=NULL)bio::physical::Class< T >inline
Identifiable< StandardDimension >::Class(Identifiable< StandardDimension > *object, Symmetry *symmetry=NULL)bio::physical::Class< Identifiable< StandardDimension > >inline
bio::log::Writer::bio::Class(Filterable *object, Symmetry *symmetry=NULL)bio::physical::Class< Filterable >inline
bio::log::Writer::Class< Writer >::Class(Writer *object, Symmetry *symmetry=NULL)bio::physical::Class< Writer >inline
bio::chemical::Atom::Class(Atom *object, Symmetry *symmetry=NULL)bio::physical::Class< Atom >inline
bio::Clone() constbio::physical::Class< T >inlinevirtual
Identifiable< StandardDimension >::Clone() constbio::physical::Class< Identifiable< StandardDimension > >inlinevirtual
bio::log::Writer::bio::Clone() constbio::physical::Class< Filterable >inlinevirtual
bio::log::Writer::Class< Writer >::Clone() constbio::physical::Class< Writer >inlinevirtual
bio::chemical::Atom::Clone() constbio::physical::Class< Atom >inlinevirtual
CloneIntoName(Name name)bio::physical::Identifiable< StandardDimension >inline
bio::Convert(Wave *wave)bio::physical::Class< T >inline
Identifiable< StandardDimension >::Convert(Wave *wave)bio::physical::Class< Identifiable< StandardDimension > >inline
bio::log::Writer::bio::Convert(Wave *wave)bio::physical::Class< Filterable >inline
bio::log::Writer::Class< Writer >::Convert(Wave *wave)bio::physical::Class< Writer >inline
bio::chemical::Atom::Convert(Wave *wave)bio::physical::Class< Atom >inline
Demodulate()bio::physical::Wavevirtual
Demodulate() constbio::physical::Wavevirtual
bio::Disattenuate(const Wave *other)bio::physical::Wavevirtual
bio::chemical::Atom::Disattenuate(const Wave *other)bio::chemical::Atomvirtual
ExternalLog(Filter logFilter, Level level, const char *format,...) constbio::log::Writer
filterbio::chemical::Class< T >
Filterable(Filter filter)bio::physical::Filterable
FormBond(T toBond, BondType type=bond_type::Unknown())bio::chemical::Atominline
FormBondImplementation(Wave *toBond, AtomicNumber id, BondType type)bio::chemical::Atomprotectedvirtual
GetAllBonds()bio::chemical::Atom
GetAllBonds() constbio::chemical::Atom
GetBonded(Valence position)bio::chemical::Atom
GetBonded(Valence position) constbio::chemical::Atom
GetBondPosition(AtomicNumber bondedId) constbio::chemical::Atom
GetBondPosition(Name typeName) constbio::chemical::Atom
GetBondPosition() constbio::chemical::Atominline
GetBondType(Valence position) constbio::chemical::Atom
GetBondType() constbio::chemical::Atominline
GetFilter() constbio::physical::Filterable
GetLogEngine()bio::log::Writer
GetLogEngine() constbio::log::Writer
GetPerspective() constbio::physical::Observer< Perspective< StandardDimension > >inlinevirtual
GetProperties() constbio::physical::Wavevirtual
bio::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
bio::GetResonanceBetween(const Wave *wave1, const Wave *wave2)bio::physical::Wavestatic
bio::GetResonanceBetween(const Wave *wave, const Properties &properties)bio::physical::Wavestatic
Identifiable< StandardDimension >::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
Identifiable< StandardDimension >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)bio::physical::Wavestatic
Identifiable< StandardDimension >::GetResonanceBetween(const Wave *wave, const Properties &properties)bio::physical::Wavestatic
Class< Writer >::bio::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
Class< Writer >::bio::GetResonanceBetween(const Wave *wave1, const Wave *wave2)bio::physical::Wavestatic
Class< Writer >::bio::GetResonanceBetween(const Wave *wave, const Properties &properties)bio::physical::Wavestatic
bio::chemical::Atom::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
bio::chemical::Atom::GetResonanceBetween(const Wave *wave1, const Wave *wave2)bio::physical::Wavestatic
bio::chemical::Atom::GetResonanceBetween(const Wave *wave, const Properties &properties)bio::physical::Wavestatic
HasLogEngine() constbio::log::Writer
Id typedefbio::physical::Identifiable< StandardDimension >
Ids typedefbio::physical::Identifiable< StandardDimension >
Initialize(ByteStreams args)bio::VirtualBaseprotected
Initialize(ByteStream arg1)bio::VirtualBaseprotected
Initialize(ByteStream arg1, ByteStream arg2)bio::VirtualBaseprotected
Initialize(ByteStream arg1, ByteStream arg2, ByteStream arg3)bio::VirtualBaseprotected
Identifiable< StandardDimension >::InitializeImplementation(ByteStreams args)bio::physical::Observer< Perspective< StandardDimension > >inlineprotectedvirtual
bio::log::Writer::InitializeImplementation(ByteStreams args)bio::log::Writerprotectedvirtual
Log(Level level, const char *format,...) constbio::log::Writerprotected
m_bondsbio::chemical::Atomprotected
m_filterbio::physical::Filterableprotected
m_hasBeenInitializedbio::VirtualBaseprotected
m_idbio::physical::Identifiable< StandardDimension >
bio::m_objectbio::physical::Class< T >protected
Identifiable< StandardDimension >::m_objectbio::physical::Class< Identifiable< StandardDimension > >protected
bio::log::Writer::bio::m_objectbio::physical::Class< Filterable >protected
bio::log::Writer::Class< Writer >::m_objectbio::physical::Class< Writer >protected
bio::chemical::Atom::m_objectbio::physical::Class< Atom >protected
bio::m_signalbio::physical::Waveprotected
Identifiable< StandardDimension >::m_signalbio::physical::Waveprotected
bio::log::Writer::Class< Writer >::m_signalbio::physical::Waveprotected
bio::chemical::Atom::m_signalbio::physical::Waveprotected
bio::m_symmetrybio::physical::Waveprotected
Identifiable< StandardDimension >::m_symmetrybio::physical::Waveprotected
bio::log::Writer::Class< Writer >::m_symmetrybio::physical::Waveprotected
bio::chemical::Atom::m_symmetrybio::physical::Waveprotected
Modulate(Wave *signal)bio::physical::Wavevirtual
Observer(Perspective *perspective=NULL)bio::physical::Observer< Perspective< StandardDimension > >inlineexplicit
Observer(const Observer &other)bio::physical::Observer< Perspective< StandardDimension > >inline
operator Atom *()bio::physical::Class< Atom >inlinevirtual
operator Filterable *()bio::physical::Class< Filterable >inlinevirtual
operator Identifiable< StandardDimension > *()bio::physical::Class< Identifiable< StandardDimension > >inlinevirtual
operator T()bio::chemical::Atominline
operator T*()bio::physical::Class< T >inlinevirtual
bio::operator Wave *()bio::physical::Class< T >inlinevirtual
Identifiable< StandardDimension >::operator Wave *()bio::physical::Class< Identifiable< StandardDimension > >inlinevirtual
bio::log::Writer::bio::operator Wave *()bio::physical::Class< Filterable >inlinevirtual
bio::log::Writer::Class< Writer >::operator Wave *()bio::physical::Class< Writer >inlinevirtual
bio::chemical::Atom::operator Wave *()bio::physical::Class< Atom >inlinevirtual
operator Writer *()bio::physical::Class< Writer >inlinevirtual
operator*(Wave *signal)bio::physical::Wavevirtual
operator*()bio::physical::Wavevirtual
operator*() constbio::physical::Wavevirtual
operator+(const Wave *other)bio::physical::Wavevirtual
operator-(const Wave *other)bio::physical::Wavevirtual
operator|(Symmetry *symmetry)bio::physical::Wavevirtual
perspectivebio::chemical::Class< T >
Perspective typedefbio::physical::Observer< Perspective< StandardDimension > >
bio::Reify(Symmetry *symmetry)bio::physical::Wavevirtual
bio::log::Writer::Reify(Symmetry *symmetry)bio::physical::Filterablevirtual
bio::chemical::Atom::Reify(physical::Symmetry *symmetry)bio::chemical::Atomvirtual
SetFilter(Filter filter)bio::physical::Filterablevirtual
SetLogEngine(Engine *logEngine)bio::log::Writervirtual
SetPerspective(Perspective *perspective)bio::physical::Observer< Perspective< StandardDimension > >inlinevirtual
bio::Spin() constbio::physical::Wavevirtual
bio::log::Writer::Spin() constbio::physical::Filterablevirtual
bio::chemical::Atom::Spin() constbio::chemical::Atomvirtual
VirtualBase()bio::VirtualBaseprotected
bio::Wave(Symmetry *symmetry=NULL)bio::physical::Wave
Identifiable< StandardDimension >::Wave(Symmetry *symmetry=NULL)bio::physical::Wave
bio::log::Writer::Class< Writer >::Wave(Symmetry *symmetry=NULL)bio::physical::Wave
bio::chemical::Atom::Wave(Symmetry *symmetry=NULL)bio::physical::Wave
Writer(Engine *logEngine, Filter logFilter)bio::log::Writer
~Atom()bio::chemical::Atomvirtual
bio::~Class()bio::physical::Class< T >inlinevirtual
Identifiable< StandardDimension >::~Class()bio::physical::Class< Identifiable< StandardDimension > >inlinevirtual
bio::log::Writer::bio::~Class()bio::physical::Class< Filterable >inlinevirtual
bio::log::Writer::Class< Writer >::~Class()bio::physical::Class< Writer >inlinevirtual
bio::chemical::Atom::~Class()bio::physical::Class< Atom >inlinevirtual
~Filterable()bio::physical::Filterablevirtual
~Observer()bio::physical::Observer< Perspective< StandardDimension > >inlinevirtual
~VirtualBase()bio::VirtualBaseprotectedvirtual
~Wave()bio::physical::Wavevirtual
~Writer()bio::log::Writervirtual