bio::chemical::UnorderedMotif< CONTENT_TYPE > Member List

This is the complete list of members for bio::chemical::UnorderedMotif< CONTENT_TYPE >, including all inherited members.

AbstractMotif()	bio::chemical::AbstractMotif
AddImplementation(const CONTENT_TYPE content)	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
As()	bio::chemical::Atom	inline
As() const	bio::chemical::Atom	inline
AsAtom()	bio::physical::Wave	inlinevirtual
AsAtom() const	bio::physical::Wave	inlinevirtual
AsBonded()	bio::chemical::Atom	inline
AsBonded() const	bio::chemical::Atom	inline
AsBondedQuantum()	bio::chemical::Atom	inline
AsBondedQuantum() const	bio::chemical::Atom	inline
bio::AsWave()	bio::physical::Class< T >	inlinevirtual
bio::AsWave() const	bio::physical::Class< T >	inlinevirtual
Identifiable< StandardDimension >::AsWave()	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
Identifiable< StandardDimension >::AsWave() const	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
bio::log::Writer::bio::AsWave()	bio::physical::Class< Filterable >	inlinevirtual
bio::log::Writer::AsWave() const	bio::physical::Class< Filterable >	inlinevirtual
bio::log::Writer::Class< Writer >::AsWave()	bio::physical::Class< Writer >	inlinevirtual
bio::Class< Writer >::AsWave() const	bio::physical::Class< Writer >	inlinevirtual
bio::chemical::Atom::AsWave()	bio::physical::Class< Atom >	inlinevirtual
bio::chemical::Atom::AsWave() const	bio::physical::Class< Atom >	inlinevirtual
Atom(const Atom &other)	bio::chemical::Atom	explicit
bio::Attenuate(const Wave *other)	bio::physical::Wave	virtual
bio::chemical::Atom::Attenuate(const Wave *other)	bio::chemical::Atom	virtual
BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< CONTENT_TYPE >) UnorderedMotif()	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inline
Class< UnorderedMotif< CONTENT_TYPE > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< CONTENT_TYPE >) Class(UnorderedMotif< CONTENT_TYPE > *object	bio::chemical::Class< UnorderedMotif< CONTENT_TYPE > >
Class< UnorderedMotif< CONTENT_TYPE > >::Identifiable< StandardDimension >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Identifiable< StandardDimension >) explicit Identifiable(Perspective< StandardDimension > *perspective	bio::physical::Identifiable< StandardDimension >
Class< UnorderedMotif< CONTENT_TYPE > >::bio::log::Writer::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Writer) Writer()	bio::log::Writer
Class< UnorderedMotif< CONTENT_TYPE > >::bio::physical::Filterable::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Filterable) Filterable()	bio::physical::Filterable
bio::chemical::Atom::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Atom) explicit Atom()	bio::chemical::Atom
BreakBond(T toDisassociate, BondType type=bond_type::Unknown())	bio::chemical::Atom	inline
BreakBondImplementation(Wave *toDisassociate, AtomicNumber id, BondType type)	bio::chemical::Atom	protectedvirtual
bio::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
Identifiable< StandardDimension >::Class(Identifiable< StandardDimension > *object, Symmetry *symmetry=NULL)	bio::physical::Class< Identifiable< StandardDimension > >	inline
bio::log::Writer::bio::Class(Filterable *object, Symmetry *symmetry=NULL)	bio::physical::Class< Filterable >	inline
bio::log::Writer::Class< Writer >::Class(Writer *object, Symmetry *symmetry=NULL)	bio::physical::Class< Writer >	inline
bio::chemical::Atom::Class(Atom *object, Symmetry *symmetry=NULL)	bio::physical::Class< Atom >	inline
ClearImplementation()	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
bio::Clone() const	bio::physical::Class< T >	inlinevirtual
Identifiable< StandardDimension >::Clone() const	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
bio::log::Writer::bio::Clone() const	bio::physical::Class< Filterable >	inlinevirtual
bio::log::Writer::Class< Writer >::Clone() const	bio::physical::Class< Writer >	inlinevirtual
bio::chemical::Atom::Clone() const	bio::physical::Class< Atom >	inlinevirtual
CloneIntoName(Name name)	bio::physical::Identifiable< StandardDimension >	inline
Contents typedef	bio::chemical::UnorderedMotif< CONTENT_TYPE >
bio::Convert(Wave *wave)	bio::physical::Class< T >	inline
Identifiable< StandardDimension >::Convert(Wave *wave)	bio::physical::Class< Identifiable< StandardDimension > >	inline
bio::log::Writer::bio::Convert(Wave *wave)	bio::physical::Class< Filterable >	inline
bio::log::Writer::Class< Writer >::Convert(Wave *wave)	bio::physical::Class< Writer >	inline
bio::chemical::Atom::Convert(Wave *wave)	bio::physical::Class< Atom >	inline
Demodulate()	bio::physical::Wave	virtual
Demodulate() const	bio::physical::Wave	virtual
bio::Disattenuate(const Wave *other)	bio::physical::Wave	virtual
bio::chemical::Atom::Disattenuate(const Wave *other)	bio::chemical::Atom	virtual
ExternalLog(Filter logFilter, Level level, const char *format,...) const	bio::log::Writer
filter	bio::chemical::Class< UnorderedMotif< CONTENT_TYPE > >
Filterable(Filter filter)	bio::physical::Filterable
FormBond(T toBond, BondType type=bond_type::Unknown())	bio::chemical::Atom	inline
FormBondImplementation(Wave *toBond, AtomicNumber id, BondType type)	bio::chemical::Atom	protectedvirtual
GetAllBonds()	bio::chemical::Atom
GetAllBonds() const	bio::chemical::Atom
GetAllImplementation()	bio::chemical::AbstractMotif	virtual
GetAllImplementation() const	bio::chemical::AbstractMotif	virtual
GetBonded(Valence position)	bio::chemical::Atom
GetBonded(Valence position) const	bio::chemical::Atom
GetBondPosition(AtomicNumber bondedId) const	bio::chemical::Atom
GetBondPosition(Name typeName) const	bio::chemical::Atom
GetBondPosition() const	bio::chemical::Atom	inline
GetBondType(Valence position) const	bio::chemical::Atom
GetBondType() const	bio::chemical::Atom	inline
GetClassProperties()	bio::chemical::AbstractMotif	static
GetCountImplementation() const	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
GetFilter() const	bio::physical::Filterable
GetLogEngine()	bio::log::Writer
GetLogEngine() const	bio::log::Writer
GetNumMatchingImplementation(const Container *other) const	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
GetPerspective() const	bio::physical::Observer< Perspective< StandardDimension > >	inlinevirtual
GetProperties() const	bio::physical::Wave	virtual
bio::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
bio::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
bio::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
Identifiable< StandardDimension >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
Identifiable< StandardDimension >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
Identifiable< StandardDimension >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
Class< Writer >::bio::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
Class< Writer >::bio::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
Class< Writer >::bio::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
bio::chemical::Atom::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
bio::chemical::Atom::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
bio::chemical::Atom::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
GetStringFromImplementation(std::string separator=", ")	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
HasAllImplementation(const Container *contents) const	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
HasImplementation(const CONTENT_TYPE content) const	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
HasLogEngine() const	bio::log::Writer
Id typedef	bio::physical::Identifiable< StandardDimension >
Ids typedef	bio::physical::Identifiable< StandardDimension >
ImportImplementation(const UnorderedMotif< CONTENT_TYPE > *other)	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
bio::chemical::AbstractMotif::ImportImplementation(const void *other)	bio::chemical::AbstractMotif	inlinevirtual
Initialize(ByteStreams args)	bio::VirtualBase	protected
Initialize(ByteStream arg1)	bio::VirtualBase	protected
Initialize(ByteStream arg1, ByteStream arg2)	bio::VirtualBase	protected
Initialize(ByteStream arg1, ByteStream arg2, ByteStream arg3)	bio::VirtualBase	protected
Identifiable< StandardDimension >::InitializeImplementation(ByteStreams args)	bio::physical::Observer< Perspective< StandardDimension > >	inlineprotectedvirtual
bio::log::Writer::InitializeImplementation(ByteStreams args)	bio::log::Writer	protectedvirtual
Log(Level level, const char *format,...) const	bio::log::Writer	protected
m_bonds	bio::chemical::Atom	protected
m_contents	bio::chemical::AbstractMotif	mutableprotected
m_filter	bio::physical::Filterable	protected
m_hasBeenInitialized	bio::VirtualBase	protected
m_id	bio::physical::Identifiable< StandardDimension >
bio::m_object	bio::physical::Class< T >	protected
Identifiable< StandardDimension >::m_object	bio::physical::Class< Identifiable< StandardDimension > >	protected
bio::log::Writer::bio::m_object	bio::physical::Class< Filterable >	protected
bio::log::Writer::Class< Writer >::m_object	bio::physical::Class< Writer >	protected
bio::chemical::Atom::m_object	bio::physical::Class< Atom >	protected
bio::m_signal	bio::physical::Wave	protected
Identifiable< StandardDimension >::m_signal	bio::physical::Wave	protected
bio::log::Writer::Class< Writer >::m_signal	bio::physical::Wave	protected
bio::chemical::Atom::m_signal	bio::physical::Wave	protected
bio::m_symmetry	bio::physical::Wave	protected
Identifiable< StandardDimension >::m_symmetry	bio::physical::Wave	protected
bio::log::Writer::Class< Writer >::m_symmetry	bio::physical::Wave	protected
bio::chemical::Atom::m_symmetry	bio::physical::Wave	protected
Modulate(Wave *signal)	bio::physical::Wave	virtual
Observer(Perspective *perspective=NULL)	bio::physical::Observer< Perspective< StandardDimension > >	inlineexplicit
Observer(const Observer &other)	bio::physical::Observer< Perspective< StandardDimension > >	inline
operator Atom *()	bio::physical::Class< Atom >	inlinevirtual
operator Filterable *()	bio::physical::Class< Filterable >	inlinevirtual
operator Identifiable< StandardDimension > *()	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
operator T()	bio::chemical::Atom	inline
operator T*()	bio::physical::Class< T >	inlinevirtual
bio::operator Wave *()	bio::physical::Class< T >	inlinevirtual
Identifiable< StandardDimension >::operator Wave *()	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
bio::log::Writer::bio::operator Wave *()	bio::physical::Class< Filterable >	inlinevirtual
bio::log::Writer::Class< Writer >::operator Wave *()	bio::physical::Class< Writer >	inlinevirtual
bio::chemical::Atom::operator Wave *()	bio::physical::Class< Atom >	inlinevirtual
operator Writer *()	bio::physical::Class< Writer >	inlinevirtual
operator*(Wave *signal)	bio::physical::Wave	virtual
operator*()	bio::physical::Wave	virtual
operator*() const	bio::physical::Wave	virtual
operator+(const Wave *other)	bio::physical::Wave	virtual
operator-(const Wave *other)	bio::physical::Wave	virtual
operator|(Symmetry *symmetry)	bio::physical::Wave	virtual
perspective	bio::chemical::Class< UnorderedMotif< CONTENT_TYPE > >
Perspective typedef	bio::physical::Observer< Perspective< StandardDimension > >
bio::Reify(Symmetry *symmetry)	bio::physical::Wave	virtual
bio::log::Writer::Reify(Symmetry *symmetry)	bio::physical::Filterable	virtual
bio::chemical::Atom::Reify(physical::Symmetry *symmetry)	bio::chemical::Atom	virtual
RemoveImplementation(const CONTENT_TYPE content)	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
SetFilter(Filter filter)	bio::physical::Filterable	virtual
SetLogEngine(Engine *logEngine)	bio::log::Writer	virtual
SetPerspective(Perspective *perspective)	bio::physical::Observer< Perspective< StandardDimension > >	inlinevirtual
bio::Spin() const	bio::physical::Wave	virtual
bio::log::Writer::Spin() const	bio::physical::Filterable	virtual
bio::chemical::Atom::Spin() const	bio::chemical::Atom	virtual
UnorderedMotif(const Contents *contents)	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inline
UnorderedMotif(const UnorderedMotif< CONTENT_TYPE > *toCopy)	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inline
VirtualBase()	bio::VirtualBase	protected
bio::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
Identifiable< StandardDimension >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::log::Writer::Class< Writer >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::chemical::Atom::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
Writer(Engine *logEngine, Filter logFilter)	bio::log::Writer
~AbstractMotif()	bio::chemical::AbstractMotif	virtual
~Atom()	bio::chemical::Atom	virtual
bio::~Class()	bio::physical::Class< T >	inlinevirtual
Identifiable< StandardDimension >::~Class()	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
bio::log::Writer::bio::~Class()	bio::physical::Class< Filterable >	inlinevirtual
bio::log::Writer::Class< Writer >::~Class()	bio::physical::Class< Writer >	inlinevirtual
bio::chemical::Atom::~Class()	bio::physical::Class< Atom >	inlinevirtual
~Filterable()	bio::physical::Filterable	virtual
~Observer()	bio::physical::Observer< Perspective< StandardDimension > >	inlinevirtual
~UnorderedMotif()	bio::chemical::UnorderedMotif< CONTENT_TYPE >	inlinevirtual
~VirtualBase()	bio::VirtualBase	protectedvirtual
~Wave()	bio::physical::Wave	virtual
~Writer()	bio::log::Writer	virtual