Pathway.cpp

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/*
 * This file is a part of the Biology project by eons LLC.
 * Biology (aka Develop Biology) is a framework for approaching software
 * development from a natural sciences perspective.
 *
 * Copyright (C) 2021 Séon O'Shannon & eons LLC
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <https://www.gnu.org/licenses/>.
 */
 
//
// Created by eons on 12/17/21.
//
 
#include "bio/molecular/Pathway.h"
 
namespace bio {
namespace molecular {
 
Pathway::~Pathway()
{
 
}
 
chemical::Products Pathway::Process(chemical::Reactants* reactants)
{
    BIO_SANITIZE(reactants,,return code::BadArgument1())
 
    chemical::Products products(reactants);
    Reaction* reactionBuffer;
    for (
        SmartIterator rct = GetAll< Reaction* >()->Begin();
        !rct.IsAtEnd();
        ++rct
        )
    {
        if (products == code::Success() && products != code::NoErrorNoSuccess())
        {
            chemical::Reactants nextReactants(products);
            reactionBuffer = rct;
            products = (*reactionBuffer)(&nextReactants);
        }
        else
        {
            break;
        }
    }
    return products;
}
 
bool Pathway::ReactantsMeetRequirements(const chemical::Reactants* toCheck) const
{
    BIO_SANITIZE(GetCount< chemical::Reaction* >(),,return false)
    return GetAll< chemical::Reaction* >()->Begin().As< chemical::Reaction* >()->ReactantsMeetRequirements(toCheck);
}
 
} //molecular namespace
} //bio namespace