bio::PlasmidPerspectiveImplementation Class Reference

#include <PlasmidPerspective.h>

Inheritance diagram for bio::PlasmidPerspectiveImplementation:

Collaboration diagram for bio::PlasmidPerspectiveImplementation:

Public Member Functions
Id	GetIdFromName (const Name &name)
Public Member Functions inherited from bio::physical::TypedPerspective< Id >
	TypedPerspective ()
virtual	~TypedPerspective ()
virtual bool	AssociateType (const Id &id, Pointer< physical::Wave > type)
virtual bool	DisassociateType (const Id &id)
virtual bool	IsTypeAssociated (const Id &id) const
virtual Pointer< const Wave >	GetTypeFromId (const Id &id) const
virtual Pointer< const Wave >	GetTypeFromName (const Name &name) const
const T	GetTypeFromIdAs (const Id &id) const
const T	GetTypeFromNameAs (const Name &name) const
virtual Pointer< Wave >	GetNewObjectFromId (const Id &id) const
virtual Pointer< Wave >	GetNewObjectFromName (const Name &name)
T	GetNewObjectFromIdAs (const Id &id)
T	GetNewObjectFromNameAs (const Name &name)
Public Member Functions inherited from bio::physical::Perspective< DIMENSION >
	Perspective ()
virtual	~Perspective ()
SmartIterator	Find (const DIMENSION &id)
SmartIterator	Find (const DIMENSION &id) const
virtual Name	GetNameFromId (const DIMENSION &id) const
virtual DIMENSION	GetUniqueIdFor (const Name &name)
virtual DIMENSION	GetIdWithoutCreation (const Name &name) const
virtual DIMENSION	GetNumUsedIds () const
Public Member Functions inherited from bio::ThreadSafe
	ThreadSafe ()
	ThreadSafe (const ThreadSafe &toCopy)
ThreadSafe &	operator= (const ThreadSafe &toCopy)
	~ThreadSafe ()
void	LockThread () const
void	UnlockThread () const
void	LockMutexShared () const
void	UnlockMutexShared () const

Additional Inherited Members
Static Public Member Functions inherited from bio::physical::Perspective< DIMENSION >
static DIMENSION	InvalidId ()
static Name	InvalidName ()
Protected Member Functions inherited from bio::physical::TypedPerspective< Id >
virtual Pointer< Brane< Id > >	CreateBrane (Id id, const Name &name)
Protected Member Functions inherited from bio::physical::Perspective< DIMENSION >
void	RegisterBrane (Pointer< Brane< DIMENSION > > brane)
virtual Pointer< Brane< DIMENSION > >	CreateBrane (DIMENSION id, const Name &name)
template<class T >
T	GetBraneAs (DIMENSION id)
template<class T >
const T	GetBraneAs (DIMENSION id) const
Static Protected Member Functions inherited from bio::physical::Perspective< DIMENSION >
::std::string	IndexKeyFor (const Name &name)
Protected Attributes inherited from bio::physical::Perspective< DIMENSION >
Pointer< Container >	mBranes
DIMENSION	mNextId
mutable ::std::map< DIMENSION, Index >	mByIdIndex

Detailed Description

The PlasmidPerspective is an additional Perspective that allows Plasmid objects to be retrieved by human-readable, non-unique, and/or short Names.
The PeriodicTable is incapable of associating common names (e.g. "MyPlasmid") with globally unique objects (e.g. MyPlasmid*).

Member Function Documentation

GetIdFromName()

Id bio::PlasmidPerspectiveImplementation::GetIdFromName ( const Name &  name )

inlinevirtual

This will create a new DIMENSION for the given name if one does not exist.

Parameters

name

Returns

the DIMENSION associated with the given name

Reimplemented from bio::physical::Perspective< DIMENSION >.

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The documentation for this class was generated from the following file:

• PlasmidPerspective.h