| AbstractMotif() | bio::chemical::AbstractMotif | |
| AddImplementation(Organ * content) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| UnorderedMotif< Organ * >::AddImplementation(const Organ * content) | bio::chemical::UnorderedMotif< Organ * > | inlinevirtual |
| As() | bio::chemical::Atom | inline |
| LinearMotif< Organ * >::As() const | bio::chemical::Atom | inline |
| AsAtom() | bio::physical::Wave | inlinevirtual |
| LinearMotif< Organ * >::AsAtom() const | bio::physical::Wave | inlinevirtual |
| AsBonded() | bio::chemical::Atom | inline |
| LinearMotif< Organ * >::AsBonded() const | bio::chemical::Atom | inline |
| AsBondedQuantum() | bio::chemical::Atom | inline |
| LinearMotif< Organ * >::AsBondedQuantum() const | bio::chemical::Atom | inline |
| LinearMotif< Organ * >::AsWave() | bio::physical::Class< T > | inlinevirtual |
| LinearMotif< Organ * >::AsWave() const | bio::physical::Class< T > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::Identifiable< StandardDimension >::AsWave() | bio::physical::Class< Identifiable< StandardDimension > > | inlinevirtual |
| LinearMotif< Organ * >::Identifiable< StandardDimension >::AsWave() const | bio::physical::Class< Identifiable< StandardDimension > > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::bio::AsWave() | bio::physical::Class< Filterable > | inlinevirtual |
| LinearMotif< Organ * >::bio::log::Writer::AsWave() const | bio::physical::Class< Filterable > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::Class< Writer >::AsWave() | bio::physical::Class< Writer > | inlinevirtual |
| LinearMotif< Organ * >::Class< Writer >::AsWave() const | bio::physical::Class< Writer > | inlinevirtual |
| LinearMotif< Organ * >::bio::chemical::Atom::AsWave() | bio::physical::Class< Atom > | inlinevirtual |
| bio::chemical::Atom::AsWave() const | bio::physical::Class< Atom > | inlinevirtual |
| Atom(const Atom &other) | bio::chemical::Atom | explicit |
| Attenuate(const physical::Wave *other) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| Class< LinearMotif< Organ * > >::Attenuate(const Wave *other) | bio::chemical::Atom | virtual |
| BIO_DISAMBIGUATE_ALL_CLASS_METHODS(cellular, OrganSystem) BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS(cellular | bio::cellular::OrganSystem | |
| Class< OrganSystem >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(genetic, OrganSystem) Class(OrganSystem *object | bio::cellular::Class< OrganSystem > | private |
| Class< OrganSystem >::bio::genetic::Class::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(molecular, T) Class(T *object | bio::genetic::Class< T > | private |
| Class< OrganSystem >::bio::molecular::Class::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, T) Class(T *object | bio::molecular::Class< T > | private |
| Class< OrganSystem >::bio::chemical::Class::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, T) Class(T *object | bio::chemical::Class< T > | private |
| Class< OrganSystem >::Identifiable< StandardDimension >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Identifiable< StandardDimension >) explicit Identifiable(Perspective< StandardDimension > *perspective | bio::physical::Identifiable< StandardDimension > | private |
| Class< OrganSystem >::bio::log::Writer::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Writer) Writer() | bio::log::Writer | private |
| Class< OrganSystem >::bio::physical::Filterable::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Filterable) Filterable() | bio::physical::Filterable | private |
| Class< OrganSystem >::bio::chemical::Atom::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Atom) explicit Atom() | bio::chemical::Atom | private |
| Class< OrganSystem >::bio::chemical::Substance::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Substance) Class(Substance *object | bio::chemical::Class< Substance > | private |
| Class< OrganSystem >::bio::chemical::Substance::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< Property >) UnorderedMotif() | bio::chemical::UnorderedMotif< Property > | inlineprivate |
| Class< OrganSystem >::Class< UnorderedMotif< Property > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< Property >) Class(UnorderedMotif< Property > *object | bio::chemical::Class< UnorderedMotif< Property > > | private |
| Class< OrganSystem >::bio::chemical::Substance::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< State >) UnorderedMotif() | bio::chemical::UnorderedMotif< State > | inlineprivate |
| Class< OrganSystem >::Class< UnorderedMotif< State > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< State >) Class(UnorderedMotif< State > *object | bio::chemical::Class< UnorderedMotif< State > > | private |
| Class< OrganSystem >::bio::molecular::Molecule::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(molecular, Molecule) BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS(molecular | bio::molecular::Molecule | private |
| Class< OrganSystem >::Class< Molecule >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, Molecule) Class(Molecule *object | bio::molecular::Class< Molecule > | private |
| Class< OrganSystem >::bio::chemical::Class::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, T) Class(T *object | bio::chemical::Class< T > | private |
| Class< OrganSystem >::LinearMotif< Surface * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, LinearMotif< Surface * >) Class(LinearMotif< Surface * > *object | bio::chemical::Class< LinearMotif< Surface * > > | private |
| Class< OrganSystem >::LinearMotif< Surface * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< Surface * >) UnorderedMotif() | bio::chemical::UnorderedMotif< Surface * > | inlineprivate |
| Class< OrganSystem >::Class< UnorderedMotif< Surface * > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< Surface * >) Class(UnorderedMotif< Surface * > *object | bio::chemical::Class< UnorderedMotif< Surface * > > | private |
| Class< OrganSystem >::bio::physical::Periodic::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Periodic) static TimeUS GetDefaultInterval() | bio::physical::Periodic | private |
| Class< OrganSystem >::bio::molecular::Vesicle::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(molecular, Vesicle) BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS(molecular | bio::molecular::Vesicle | private |
| Class< OrganSystem >::Class< Vesicle >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, Vesicle) Class(Vesicle *object | bio::molecular::Class< Vesicle > | private |
| Class< OrganSystem >::LinearMotif< Molecule * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, LinearMotif< Molecule * >) Class(LinearMotif< Molecule * > *object | bio::chemical::Class< LinearMotif< Molecule * > > | private |
| Class< OrganSystem >::LinearMotif< Molecule * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< Molecule * >) UnorderedMotif() | bio::chemical::UnorderedMotif< Molecule * > | inlineprivate |
| Class< OrganSystem >::Class< UnorderedMotif< Molecule * > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< Molecule * >) Class(UnorderedMotif< Molecule * > *object | bio::chemical::Class< UnorderedMotif< Molecule * > > | private |
| LinearMotif< Organ * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, LinearMotif< Organ * >) Class(LinearMotif< Organ * > *object | bio::chemical::Class< LinearMotif< Organ * > > | |
| LinearMotif< Organ * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< Organ * >) UnorderedMotif() | bio::chemical::UnorderedMotif< Organ * > | inline |
| Class< UnorderedMotif< Organ * > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< Organ * >) Class(UnorderedMotif< Organ * > *object | bio::chemical::Class< UnorderedMotif< Organ * > > | |
| BIO_DISAMBIGUATE_REQUIRED_CLASS_METHODS(chemical, LinearMotif< Organ * >) BIO_DISAMBIGUATE_OPTIONAL_CLASS_METHODS(physical | bio::chemical::LinearMotif< Organ * > | |
| BreakBond(T toDisassociate, BondType type=bond_type::Unknown()) | bio::chemical::Atom | inline |
| BreakBondImplementation(Wave *toDisassociate, AtomicNumber id, BondType type) | bio::chemical::Atom | protectedvirtual |
| LinearMotif< Organ * >::Class(T *object, Symmetry *symmetry=NULL) | bio::physical::Class< T > | inline |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::Identifiable< StandardDimension >::Class(Identifiable< StandardDimension > *object, Symmetry *symmetry=NULL) | bio::physical::Class< Identifiable< StandardDimension > > | inline |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::bio::Class(Filterable *object, Symmetry *symmetry=NULL) | bio::physical::Class< Filterable > | inline |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::Class< Writer >::Class(Writer *object, Symmetry *symmetry=NULL) | bio::physical::Class< Writer > | inline |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::chemical::Atom::Class(Atom *object, Symmetry *symmetry=NULL) | bio::physical::Class< Atom > | inline |
| LinearMotif< Organ * >::UnorderedMotif< Organ * >::bio::Class(T *object, Symmetry *symmetry=NULL) | bio::physical::Class< T > | inline |
| ClearImplementation() | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| LinearMotif< Organ * >::Clone() const | bio::physical::Class< T > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::Identifiable< StandardDimension >::Clone() const | bio::physical::Class< Identifiable< StandardDimension > > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::bio::Clone() const | bio::physical::Class< Filterable > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::Class< Writer >::Clone() const | bio::physical::Class< Writer > | inlinevirtual |
| LinearMotif< Organ * >::bio::chemical::Atom::Clone() const | bio::physical::Class< Atom > | inlinevirtual |
| CloneIntoName(Name name) | bio::physical::Identifiable< StandardDimension > | inline |
| Contents typedef | bio::chemical::LinearMotif< Organ * > | |
| LinearMotif< Organ * >::Convert(Wave *wave) | bio::physical::Class< T > | inline |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::Identifiable< StandardDimension >::Convert(Wave *wave) | bio::physical::Class< Identifiable< StandardDimension > > | inline |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::bio::Convert(Wave *wave) | bio::physical::Class< Filterable > | inline |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::Class< Writer >::Convert(Wave *wave) | bio::physical::Class< Writer > | inline |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::chemical::Atom::Convert(Wave *wave) | bio::physical::Class< Atom > | inline |
| LinearMotif< Organ * >::UnorderedMotif< Organ * >::bio::Convert(Wave *wave) | bio::physical::Class< T > | inline |
| CreateImplementation(StandardDimension id) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| Demodulate() | bio::physical::Wave | virtual |
| LinearMotif< Organ * >::Demodulate() const | bio::physical::Wave | virtual |
| Disattenuate(const physical::Wave *other) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| Class< LinearMotif< Organ * > >::Disattenuate(const Wave *other) | bio::chemical::Atom | virtual |
| Elementary(const Properties properties) | bio::chemical::Elementary< LinearMotif< Organ * > > | inline |
| LinearMotif< Organ * >::Elementary() | bio::chemical::Elementary< LinearMotif< Organ * > > | inline |
| ExternalLog(Filter logFilter, Level level, const char *format,...) const | bio::log::Writer | |
| LinearMotif< Organ * >::filter | bio::chemical::Class< LinearMotif< Organ * > > | |
| LinearMotif< Organ * >::UnorderedMotif< Organ * >::filter | bio::chemical::Class< UnorderedMotif< Organ * > > | |
| filter::Cellular()) virtual ~OrganSystem() | bio::cellular::OrganSystem | |
| Filterable(Filter filter) | bio::physical::Filterable | |
| ForEachImplementation(ExcitationBase *excitation) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| FormBond(T toBond, BondType type=bond_type::Unknown()) | bio::chemical::Atom | inline |
| FormBondImplementation(Wave *toBond, AtomicNumber id, BondType type) | bio::chemical::Atom | protectedvirtual |
| GetAllBonds() | bio::chemical::Atom | |
| LinearMotif< Organ * >::GetAllBonds() const | bio::chemical::Atom | |
| GetAllImplementation() | bio::chemical::AbstractMotif | virtual |
| LinearMotif< Organ * >::GetAllImplementation() const | bio::chemical::AbstractMotif | virtual |
| GetBonded(Valence position) | bio::chemical::Atom | |
| LinearMotif< Organ * >::GetBonded(Valence position) const | bio::chemical::Atom | |
| GetBondPosition(AtomicNumber bondedId) const | bio::chemical::Atom | |
| LinearMotif< Organ * >::GetBondPosition(Name typeName) const | bio::chemical::Atom | |
| LinearMotif< Organ * >::GetBondPosition() const | bio::chemical::Atom | inline |
| GetBondType(Valence position) const | bio::chemical::Atom | |
| LinearMotif< Organ * >::GetBondType() const | bio::chemical::Atom | inline |
| GetByIdImplementation(StandardDimension id) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| LinearMotif< Organ * >::GetByIdImplementation(StandardDimension id) const | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| GetByNameImplementation(Name name) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| LinearMotif< Organ * >::GetByNameImplementation(Name name) const | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| GetClassProperties() | bio::chemical::LinearMotif< Organ * > | inlinestatic |
| GetCountImplementation() const | bio::chemical::UnorderedMotif< Organ * > | inlinevirtual |
| GetFilter() const | bio::physical::Filterable | |
| GetLogEngine() | bio::log::Writer | |
| LinearMotif< Organ * >::GetLogEngine() const | bio::log::Writer | |
| GetNumMatchingImplementation(const Container *other) const | bio::chemical::UnorderedMotif< Organ * > | inlinevirtual |
| GetOrCreateByIdImplementation(StandardDimension id) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| GetOrCreateByNameImplementation(Name name) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| GetPerspective() const | bio::physical::Observer< Perspective< StandardDimension > > | inlinevirtual |
| GetProperties() const | bio::physical::Wave | virtual |
| LinearMotif< Organ * >::GetResonanceBetween(ConstWaves waves) | bio::physical::Wave | static |
| LinearMotif< Organ * >::GetResonanceBetween(const Wave *wave1, const Wave *wave2) | bio::physical::Wave | static |
| LinearMotif< Organ * >::GetResonanceBetween(const Wave *wave, const Properties &properties) | bio::physical::Wave | static |
| Identifiable< StandardDimension >::LinearMotif< Organ * >::GetResonanceBetween(ConstWaves waves) | bio::physical::Wave | static |
| Identifiable< StandardDimension >::LinearMotif< Organ * >::GetResonanceBetween(const Wave *wave1, const Wave *wave2) | bio::physical::Wave | static |
| Identifiable< StandardDimension >::LinearMotif< Organ * >::GetResonanceBetween(const Wave *wave, const Properties &properties) | bio::physical::Wave | static |
| UnorderedMotif< Organ * >::GetResonanceBetween(ConstWaves waves) | bio::physical::Wave | static |
| UnorderedMotif< Organ * >::GetResonanceBetween(const Wave *wave1, const Wave *wave2) | bio::physical::Wave | static |
| UnorderedMotif< Organ * >::GetResonanceBetween(const Wave *wave, const Properties &properties) | bio::physical::Wave | static |
| GetStringFromImplementation(std::string separator=", ") | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| GetStructuralPerspective() | bio::chemical::LinearMotif< Organ * > | inline |
| LinearMotif< Organ * >::GetStructuralPerspective() const | bio::chemical::LinearMotif< Organ * > | inline |
| HasAllImplementation(const Container *contents) const | bio::chemical::UnorderedMotif< Organ * > | inlinevirtual |
| HasImplementation(const Organ * &content) const | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| UnorderedMotif< Organ * >::HasImplementation(const Organ * content) const | bio::chemical::UnorderedMotif< Organ * > | inlinevirtual |
| HasLogEngine() const | bio::log::Writer | |
| hasRegistered | bio::chemical::Elementary< LinearMotif< Organ * > > | static |
| Id typedef | bio::physical::Identifiable< StandardDimension > | |
| Ids typedef | bio::physical::Identifiable< StandardDimension > | |
| ImportImplementation(const LinearMotif< Organ * > *other) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| UnorderedMotif< Organ * >::ImportImplementation(const UnorderedMotif< Organ * > *other) | bio::chemical::UnorderedMotif< Organ * > | inlinevirtual |
| bio::chemical::AbstractMotif::ImportImplementation(const void *other) | bio::chemical::AbstractMotif | inlinevirtual |
| Initialize(ByteStreams args) | bio::VirtualBase | protected |
| LinearMotif< Organ * >::Initialize(ByteStream arg1) | bio::VirtualBase | protected |
| LinearMotif< Organ * >::Initialize(ByteStream arg1, ByteStream arg2) | bio::VirtualBase | protected |
| LinearMotif< Organ * >::Initialize(ByteStream arg1, ByteStream arg2, ByteStream arg3) | bio::VirtualBase | protected |
| LinearMotif< Organ * >::InitializeImplementation(ByteStreams args) | bio::physical::Observer< Perspective< StandardDimension > > | inlineprotectedvirtual |
| LinearMotif< Organ * >::bio::log::Writer::InitializeImplementation(ByteStreams args) | bio::log::Writer | protectedvirtual |
| InsertImplementation(Organ * toAdd, const Position position=BOTTOM, const StandardDimension optionalPositionArg=0, const bool transferSubContents=false) | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| LinearMotif(physical::Perspective< StandardDimension > *perspective=NULL) | bio::chemical::LinearMotif< Organ * > | inlineexplicit |
| LinearMotif< Organ * >::LinearMotif(const Contents *contents, physical::Perspective< StandardDimension > *perspective=NULL) | bio::chemical::LinearMotif< Organ * > | inlineexplicit |
| LinearMotif< Organ * >::LinearMotif(const LinearMotif< Organ * > &toCopy) | bio::chemical::LinearMotif< Organ * > | inline |
| Log(Level level, const char *format,...) const | bio::log::Writer | protected |
| m_bonds | bio::chemical::Atom | protected |
| m_contents | bio::chemical::AbstractMotif | mutableprotected |
| m_filter | bio::physical::Filterable | protected |
| m_hasBeenInitialized | bio::VirtualBase | protected |
| m_id | bio::physical::Identifiable< StandardDimension > | |
| LinearMotif< Organ * >::m_object | bio::physical::Class< T > | protected |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::Identifiable< StandardDimension >::m_object | bio::physical::Class< Identifiable< StandardDimension > > | protected |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::bio::m_object | bio::physical::Class< Filterable > | protected |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::Class< Writer >::m_object | bio::physical::Class< Writer > | protected |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::chemical::Atom::m_object | bio::physical::Class< Atom > | protected |
| LinearMotif< Organ * >::UnorderedMotif< Organ * >::bio::m_object | bio::physical::Class< T > | protected |
| m_perspective | bio::chemical::LinearMotif< Organ * > | |
| LinearMotif< Organ * >::m_signal | bio::physical::Wave | protected |
| LinearMotif< Organ * >::Identifiable< StandardDimension >::Class< LinearMotif< Organ * > >::m_signal | bio::physical::Wave | protected |
| LinearMotif< Organ * >::UnorderedMotif< Organ * >::bio::m_signal | bio::physical::Wave | protected |
| LinearMotif< Organ * >::m_symmetry | bio::physical::Wave | protected |
| LinearMotif< Organ * >::Identifiable< StandardDimension >::Class< LinearMotif< Organ * > >::m_symmetry | bio::physical::Wave | protected |
| LinearMotif< Organ * >::UnorderedMotif< Organ * >::bio::m_symmetry | bio::physical::Wave | protected |
| Modulate(Wave *signal) | bio::physical::Wave | virtual |
| Observer(Perspective *perspective=NULL) | bio::physical::Observer< Perspective< StandardDimension > > | inlineexplicit |
| LinearMotif< Organ * >::Observer(const Observer &other) | bio::physical::Observer< Perspective< StandardDimension > > | inline |
| operator Atom *() | bio::physical::Class< Atom > | inlinevirtual |
| operator Filterable *() | bio::physical::Class< Filterable > | inlinevirtual |
| operator Identifiable< StandardDimension > *() | bio::physical::Class< Identifiable< StandardDimension > > | inlinevirtual |
| operator T() | bio::chemical::Atom | inline |
| operator T*() | bio::physical::Class< T > | inlinevirtual |
| LinearMotif< Organ * >::operator Wave *() | bio::physical::Class< T > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::Identifiable< StandardDimension >::operator Wave *() | bio::physical::Class< Identifiable< StandardDimension > > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::bio::operator Wave *() | bio::physical::Class< Filterable > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::Class< Writer >::operator Wave *() | bio::physical::Class< Writer > | inlinevirtual |
| LinearMotif< Organ * >::bio::chemical::Atom::operator Wave *() | bio::physical::Class< Atom > | inlinevirtual |
| operator Writer *() | bio::physical::Class< Writer > | inlinevirtual |
| operator*(Wave *signal) | bio::physical::Wave | virtual |
| LinearMotif< Organ * >::operator*() | bio::physical::Wave | virtual |
| LinearMotif< Organ * >::operator*() const | bio::physical::Wave | virtual |
| operator+(const Wave *other) | bio::physical::Wave | virtual |
| operator-(const Wave *other) | bio::physical::Wave | virtual |
| operator|(Symmetry *symmetry) | bio::physical::Wave | virtual |
| Organogenesis() | bio::cellular::OrganSystem | virtual |
| OrganSystem | bio::cellular::OrganSystem | |
| OrganSystemPerspective::Instance() | bio::cellular::OrganSystem | |
| Perspective typedef | bio::physical::Observer< Perspective< StandardDimension > > | |
| LinearMotif< Organ * >::perspective | bio::chemical::Class< LinearMotif< Organ * > > | |
| LinearMotif< Organ * >::UnorderedMotif< Organ * >::perspective | bio::chemical::Class< UnorderedMotif< Organ * > > | |
| RegisterProperties(const Properties properties) | bio::chemical::Elementary< LinearMotif< Organ * > > | inline |
| LinearMotif< Organ * >::Reify(Symmetry *symmetry) | bio::physical::Wave | virtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::Reify(Symmetry *symmetry) | bio::physical::Filterable | virtual |
| LinearMotif< Organ * >::bio::chemical::Atom::Reify(physical::Symmetry *symmetry) | bio::chemical::Atom | virtual |
| RemoveImplementation(const Organ * content) | bio::chemical::UnorderedMotif< Organ * > | inlinevirtual |
| SetFilter(Filter filter) | bio::physical::Filterable | virtual |
| SetLogEngine(Engine *logEngine) | bio::log::Writer | virtual |
| SetPerspective(Perspective *perspective) | bio::physical::Observer< Perspective< StandardDimension > > | inlinevirtual |
| LinearMotif< Organ * >::Spin() const | bio::physical::Wave | virtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::Spin() const | bio::physical::Filterable | virtual |
| LinearMotif< Organ * >::bio::chemical::Atom::Spin() const | bio::chemical::Atom | virtual |
| UnorderedMotif(const Contents *contents) | bio::chemical::UnorderedMotif< Organ * > | inline |
| LinearMotif< Organ * >::UnorderedMotif(const UnorderedMotif< Organ * > *toCopy) | bio::chemical::UnorderedMotif< Organ * > | inline |
| VirtualBase() | bio::VirtualBase | protected |
| LinearMotif< Organ * >::Wave(Symmetry *symmetry=NULL) | bio::physical::Wave | |
| LinearMotif< Organ * >::Identifiable< StandardDimension >::Class< LinearMotif< Organ * > >::Wave(Symmetry *symmetry=NULL) | bio::physical::Wave | |
| LinearMotif< Organ * >::UnorderedMotif< Organ * >::bio::Wave(Symmetry *symmetry=NULL) | bio::physical::Wave | |
| Writer(Engine *logEngine, Filter logFilter) | bio::log::Writer | |
| ~AbstractMotif() | bio::chemical::AbstractMotif | virtual |
| ~Atom() | bio::chemical::Atom | virtual |
| LinearMotif< Organ * >::~Class() | bio::physical::Class< T > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::Identifiable< StandardDimension >::~Class() | bio::physical::Class< Identifiable< StandardDimension > > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::bio::~Class() | bio::physical::Class< Filterable > | inlinevirtual |
| LinearMotif< Organ * >::Class< LinearMotif< Organ * > >::bio::log::Writer::Class< Writer >::~Class() | bio::physical::Class< Writer > | inlinevirtual |
| LinearMotif< Organ * >::bio::chemical::Atom::~Class() | bio::physical::Class< Atom > | inlinevirtual |
| ~Elementary() | bio::chemical::Elementary< LinearMotif< Organ * > > | inlinevirtual |
| ~Filterable() | bio::physical::Filterable | virtual |
| ~LinearMotif() | bio::chemical::LinearMotif< Organ * > | inlinevirtual |
| ~Observer() | bio::physical::Observer< Perspective< StandardDimension > > | inlinevirtual |
| ~UnorderedMotif() | bio::chemical::UnorderedMotif< Organ * > | inlinevirtual |
| ~VirtualBase() | bio::VirtualBase | protectedvirtual |
| ~Wave() | bio::physical::Wave | virtual |
| ~Writer() | bio::log::Writer | virtual |
1.9.4