#include <Periodic.h>

Inheritance diagram for bio::physical::Periodic:

Collaboration diagram for bio::physical::Periodic:

Public Member Functions
	Periodic (TimeUS interval=GetDefaultInterval())

virtual	~Periodic ()

	BIO_DISAMBIGUATE_ALL_CLASS_METHODS (physical, Periodic) static TimeUS GetDefaultInterval()

virtual void	CheckIn ()

TimeUS	GetInterval () const

float	GetIntervalInSeconds () const

virtual Properties	GetProperties () const

Timestamp	GetTimeLastPeaked () const

virtual void	InitializeImplementation (ByteStreams args)

virtual Code	Peak ()

virtual Code	Reify (Symmetry *symmetry)

virtual void	SetInterval (TimeUS interval)

virtual void	SetLastPeakTimestamp (Timestamp lastPeak)

virtual Symmetry *	Spin () const

Public Member Functions inherited from bio::physical::Class< Periodic >
	Class (Periodic object, Symmetry symmetry=NULL)

virtual	~Class ()

virtual Wave *	AsWave ()

virtual const Wave *	AsWave () const

virtual Wave *	Clone () const

Periodic *	Convert (Wave *wave)

virtual	operator Periodic * ()

virtual	operator Wave * ()

Public Member Functions inherited from bio::physical::Wave
	Wave (Symmetry *symmetry=NULL)

virtual	~Wave ()

virtual chemical::Atom *	AsAtom ()

virtual const chemical::Atom *	AsAtom () const

virtual Wave *	AsWave ()

virtual const Wave *	AsWave () const

virtual Code	Attenuate (const Wave *other)

virtual Wave *	Clone () const

virtual Wave *	Demodulate ()

virtual const Wave *	Demodulate () const

virtual Code	Disattenuate (const Wave *other)

virtual Properties	GetProperties () const

virtual Wave *	Modulate (Wave *signal)

virtual Wave *	operator* ()

virtual const Wave *	operator* () const

virtual Wave *	operator* (Wave *signal)

virtual void	operator+ (const Wave *other)

virtual void	operator- (const Wave *other)

virtual void	operator\| (Symmetry *symmetry)

virtual Code	Reify (Symmetry *symmetry)

virtual Symmetry *	Spin () const

Static Public Member Functions
static Properties	GetClassProperties ()

Static Public Member Functions inherited from bio::physical::Wave
static Properties	GetResonanceBetween (const Wave *wave, const Properties &properties)

static Properties	GetResonanceBetween (const Wave wave1, const Wave wave2)

static Properties	GetResonanceBetween (ConstWaves waves)

Protected Attributes
TimeUS	m_interval

Timestamp	m_lastPeakTimestamp

Protected Attributes inherited from bio::physical::Class< Periodic >
Periodic *	m_object

Protected Attributes inherited from bio::physical::Wave
Wave *	m_signal

Symmetry *	m_symmetry

Protected Attributes inherited from bio::VirtualBase
bool	m_hasBeenInitialized

Additional Inherited Members
Protected Member Functions inherited from bio::VirtualBase
	VirtualBase ()

virtual	~VirtualBase ()

void	Initialize (ByteStream arg1)

void	Initialize (ByteStream arg1, ByteStream arg2)

void	Initialize (ByteStream arg1, ByteStream arg2, ByteStream arg3)

void	Initialize (ByteStreams args)

virtual void	InitializeImplementation (ByteStreams args)=0

Detailed Description

Periodic objects do work at regular intervals.

Definition at line 34 of file Periodic.h.

Constructor & Destructor Documentation

◆ Periodic()

bio::physical::Periodic::Periodic ( TimeUS interval = GetDefaultInterval() )

Parameters

interval the period that Peak() wants to be called in microseconds.

Definition at line 44 of file Periodic.cpp.

 :
 Class(
 this,
 new Symmetry(
 "m_interval",
 symmetry_type::DefineVariable())),
 m_interval(
 interval
 ),
 m_lastPeakTimestamp(
 0
 )
{
}

◆ ~Periodic()

bio::physical::Periodic::~Periodic ( )

virtual

Definition at line 60 of file Periodic.cpp.

61{

62}

Member Function Documentation

◆ BIO_DISAMBIGUATE_ALL_CLASS_METHODS()

bio::physical::Periodic::BIO_DISAMBIGUATE_ALL_CLASS_METHODS	(	physical	,
		Periodic
	)

Ensure virtual methods point to Class implementations. Currently default is set to 200 milliseconds (200000 microseconds).

Returns: a default value for Periodic constructors.

◆ CheckIn()

void bio::physical::Periodic::CheckIn ( )

virtual

Checks the current time & calls Peak, if a long enough interval has passed. Call this method regularly (i.e. on a clock).

Definition at line 119 of file Periodic.cpp.

{
 Timestamp now = GetCurrentTimestamp();
 if (now - GetTimeLastPeaked() < GetInterval())
 {
 return;
 }
 Peak();
 SetLastPeakTimestamp(
 now
 );
}

References bio::physical::GetCurrentTimestamp(), GetInterval(), GetTimeLastPeaked(), Peak(), and SetLastPeakTimestamp().

◆ GetClassProperties()

Properties bio::physical::Periodic::GetClassProperties ( )

static

All Periodic objects share the "Periodic" Property.

Returns: {property::Periodic()}

Definition at line 36 of file Periodic.cpp.

{
 Properties ret;
 ret.push_back(
 property::Periodic());
 return ret;
}

References bio::property::Periodic(), and bio::Properties.

Referenced by GetProperties().

◆ GetInterval()

TimeUS bio::physical::Periodic::GetInterval ( ) const

Returns: the time interval between Peaks of *this, in microseconds.

Definition at line 69 of file Periodic.cpp.

{
 return m_interval;
}

References m_interval.

Referenced by CheckIn().

◆ GetIntervalInSeconds()

float bio::physical::Periodic::GetIntervalInSeconds ( ) const

Returns: the time interval between Peaks of *this, in seconds.

Definition at line 79 of file Periodic.cpp.

{
 return (static_cast<float>(m_interval)) / 1000000.0f;
}

References m_interval.

◆ GetProperties()

Properties bio::physical::Periodic::GetProperties ( ) const

virtual

Wave method. See that class for details.

Returns: Periodic::GetClassProperties()

Reimplemented from bio::physical::Wave.

Definition at line 114 of file Periodic.cpp.

{
 return GetClassProperties();
}

References GetClassProperties().

◆ GetTimeLastPeaked()

Timestamp bio::physical::Periodic::GetTimeLastPeaked ( ) const

Returns: the last time *this Peaked.

Definition at line 74 of file Periodic.cpp.

{
 return m_lastPeakTimestamp;
}

References m_lastPeakTimestamp.

Referenced by CheckIn().

◆ InitializeImplementation()

void bio::physical::Periodic::InitializeImplementation ( ByteStreams args )

virtual

VirtualBase required method. See that class for details (in common/)

Parameters

args

Implements bio::VirtualBase.

Definition at line 105 of file Periodic.cpp.

{
 BIO_SANITIZE(args.size() == 1 && args[0].Is(
 m_interval
 ), ,
 return);
 m_interval = args[0];
}

References BIO_SANITIZE, and m_interval.

◆ Peak()

virtual Code bio::physical::Periodic::Peak ( )

inlinevirtual

Peak()s occur at Periodic::m_intervals. Define your main Periodic logic here. This method must be fast:

do not read slow hardware here
do not block for a long time
do not sleep If derived classes must do slow work to oscillate, that slow logic MUST BE placed in a separate thread. This method would then get the data stored by that thread and returns the data quickly. MAKE SURE that the thread never causes a long mutex wait as a side-effect in this Peak method.

Reimplemented in bio::cellular::Cell, and bio::cellular::Organelle.

Definition at line 84 of file Periodic.h.

 {
 
 // YOU CODE GOES HERE!
 
 return code::NotImplemented();
 }

References bio::code::NotImplemented().

Referenced by CheckIn(), bio::cellular::Cell::Peak(), and bio::cellular::Organelle::Peak().

◆ Reify()

Code bio::physical::Periodic::Reify ( Symmetry * symmetry )

virtual

Required method from Wave. See that class for details. Reconstruct *this from the given Symmetry.

Parameters

symmetry

Reimplemented from bio::physical::Wave.

Definition at line 97 of file Periodic.cpp.

{
 BIO_SANITIZE(symmetry, ,
 return code::BadArgument1());
 m_interval = symmetry->GetValue();
 return code::Success();
}

References bio::code::BadArgument1(), BIO_SANITIZE, bio::physical::Symmetry::GetValue(), m_interval, and bio::code::Success().

◆ SetInterval()

void bio::physical::Periodic::SetInterval ( TimeUS interval )

virtual

Set how quickly *this should Peak()

Parameters

interval

Definition at line 64 of file Periodic.cpp.

{
 m_interval = interval;
}

References m_interval.

◆ SetLastPeakTimestamp()

void bio::physical::Periodic::SetLastPeakTimestamp ( Timestamp lastPeak )

virtual

Sets the timestamp of the last time *this Peaked. USE WITH CAUTION!

Parameters

lastPeak

Definition at line 84 of file Periodic.cpp.

{
 m_lastPeakTimestamp = lastPeak;
}

References m_lastPeakTimestamp.

Referenced by CheckIn().

◆ Spin()

Symmetry * bio::physical::Periodic::Spin ( ) const

virtual

Required method from Wave. See that class for details.

Returns: a Symmetrical image of *this

Reimplemented from bio::physical::Wave.

Definition at line 89 of file Periodic.cpp.

{
 m_symmetry->AccessValue()->Set(
 m_interval
 );
 return Wave::Spin();
}

References bio::physical::Symmetry::AccessValue(), m_interval, bio::physical::Wave::m_symmetry, bio::ByteStream::Set(), and bio::physical::Wave::Spin().

Member Data Documentation

◆ m_interval

TimeUS bio::physical::Periodic::m_interval

protected

Definition at line 146 of file Periodic.h.

Referenced by GetInterval(), GetIntervalInSeconds(), InitializeImplementation(), Reify(), SetInterval(), and Spin().

◆ m_lastPeakTimestamp

Timestamp bio::physical::Periodic::m_lastPeakTimestamp

protected

Definition at line 147 of file Periodic.h.

Referenced by GetTimeLastPeaked(), and SetLastPeakTimestamp().

The documentation for this class was generated from the following files:

/home/eons/git/biology/lib_bio/inc/bio/physical/Periodic.h
/home/eons/git/biology/lib_bio/src/physical/Periodic.cpp

Public Member Functions

Static Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Periodic()

◆ ~Periodic()

Member Function Documentation

◆ BIO_DISAMBIGUATE_ALL_CLASS_METHODS()

◆ CheckIn()

◆ GetClassProperties()

◆ GetInterval()

◆ GetIntervalInSeconds()

◆ GetProperties()

◆ GetTimeLastPeaked()

◆ InitializeImplementation()

◆ Peak()

◆ Reify()

◆ SetInterval()

◆ SetLastPeakTimestamp()

◆ Spin()

Member Data Documentation

◆ m_interval

◆ m_lastPeakTimestamp