bio::chemical::Structure Member List

This is the complete list of members for bio::chemical::Structure, including all inherited members.

Add(const T t)	bio::chemical::UnorderedStructureInterface	inline
As()	bio::chemical::Atom	inline
As() const	bio::chemical::Atom	inline
AsAtom()	bio::physical::Wave	inlinevirtual
AsAtom() const	bio::physical::Wave	inlinevirtual
AsBonded()	bio::chemical::Atom	inline
AsBonded() const	bio::chemical::Atom	inline
AsBondedQuantum()	bio::chemical::Atom	inline
AsBondedQuantum() const	bio::chemical::Atom	inline
AsWave()	bio::physical::Class< Atom >	inlinevirtual
AsWave() const	bio::physical::Class< Atom >	inlinevirtual
Atom(const Atom &other)	bio::chemical::Atom	explicit
Attenuate(const Wave *other)	bio::chemical::Atom	virtual
Class< Atom >::Attenuate(const Wave *other)	bio::physical::Wave	virtual
BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Atom) explicit Atom()	bio::chemical::Atom
BreakBond(T toDisassociate, BondType type=bond_type::Unknown())	bio::chemical::Atom	inline
BreakBondImplementation(Wave *toDisassociate, AtomicNumber id, BondType type)	bio::chemical::Atom	protectedvirtual
Class(Atom *object, Symmetry *symmetry=NULL)	bio::physical::Class< Atom >	inline
Clear()	bio::chemical::UnorderedStructureInterface	inline
Clone() const	bio::physical::Class< Atom >	inlinevirtual
Convert(Wave *wave)	bio::physical::Class< Atom >	inline
Demodulate()	bio::physical::Wave	virtual
Demodulate() const	bio::physical::Wave	virtual
Disattenuate(const Wave *other)	bio::chemical::Atom	virtual
Class< Atom >::Disattenuate(const Wave *other)	bio::physical::Wave	virtual
ForEach(ExcitationBase *excitation)	bio::chemical::LinearStructureInterface	inline
FormBond(T toBond, BondType type=bond_type::Unknown())	bio::chemical::Atom	inline
FormBondImplementation(Wave *toBond, AtomicNumber id, BondType type)	bio::chemical::Atom	protectedvirtual
GetAll()	bio::chemical::UnorderedStructureInterface	inline
GetAll() const	bio::chemical::UnorderedStructureInterface	inline
GetAllAsVector()	bio::chemical::UnorderedStructureInterface	inline
GetAllAsVector() const	bio::chemical::UnorderedStructureInterface	inline
GetAllBonds()	bio::chemical::Atom
GetAllBonds() const	bio::chemical::Atom
GetBonded(Valence position)	bio::chemical::Atom
GetBonded(Valence position) const	bio::chemical::Atom
GetBondPosition(AtomicNumber bondedId) const	bio::chemical::Atom
GetBondPosition(Name typeName) const	bio::chemical::Atom
GetBondPosition() const	bio::chemical::Atom	inline
GetBondType(Valence position) const	bio::chemical::Atom
GetBondType() const	bio::chemical::Atom	inline
GetById(StandardDimension id)	bio::chemical::LinearStructureInterface	inline
GetById(StandardDimension id) const	bio::chemical::LinearStructureInterface	inline
GetByName(Name name)	bio::chemical::LinearStructureInterface	inline
GetByName(Name name) const	bio::chemical::LinearStructureInterface	inline
GetCount() const	bio::chemical::UnorderedStructureInterface	inline
GetNumMatching(const Container *other) const	bio::chemical::UnorderedStructureInterface	inline
GetOrCreateById(StandardDimension id)	bio::chemical::LinearStructureInterface	inline
GetOrCreateByName(Name name)	bio::chemical::LinearStructureInterface	inline
GetProperties() const	bio::physical::Wave	virtual
GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
GetStringFrom(std::string separator=", ")	bio::chemical::UnorderedStructureInterface	inline
Has(T content) const	bio::chemical::UnorderedStructureInterface	inline
HasAll(const Container *contents) const	bio::chemical::UnorderedStructureInterface	inline
Import(const UnorderedMotif< T > *other)	bio::chemical::UnorderedStructureInterface	inline
Import(const std::vector< T > &other)	bio::chemical::UnorderedStructureInterface	inline
ImportAll(const physical::Wave *other)	bio::chemical::UnorderedStructureInterface	inline
Insert(T toAdd, const Position position=BOTTOM, const StandardDimension optionalPositionArg=0, const bool transferSubContents=false)	bio::chemical::LinearStructureInterface	inline
LinearStructureInterface()	bio::chemical::LinearStructureInterface	inline
LockThread() const	bio::ThreadSafe
m_bonds	bio::chemical::Atom	protected
m_object	bio::physical::Class< Atom >	protected
m_signal	bio::physical::Wave	protected
m_symmetry	bio::physical::Wave	protected
Modulate(Wave *signal)	bio::physical::Wave	virtual
operator Atom *()	bio::physical::Class< Atom >	inlinevirtual
operator T()	bio::chemical::Atom	inline
operator Wave *()	bio::physical::Class< Atom >	inlinevirtual
operator*(Wave *signal)	bio::physical::Wave	virtual
operator*()	bio::physical::Wave	virtual
operator*() const	bio::physical::Wave	virtual
operator+(const Wave *other)	bio::physical::Wave	virtual
operator-(const Wave *other)	bio::physical::Wave	virtual
operator|(Symmetry *symmetry)	bio::physical::Wave	virtual
Reify(physical::Symmetry *symmetry)	bio::chemical::Atom	virtual
Remove(const T t)	bio::chemical::UnorderedStructureInterface	inline
Spin() const	bio::chemical::Atom	virtual
Structure()	bio::chemical::Structure
ThreadSafe()	bio::ThreadSafe
ThreadSafe(const ThreadSafe &toCopy)	bio::ThreadSafe
UnlockThread() const	bio::ThreadSafe
UnorderedStructureInterface()	bio::chemical::UnorderedStructureInterface	inline
Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
~Atom()	bio::chemical::Atom	virtual
~Class()	bio::physical::Class< Atom >	inlinevirtual
~LinearStructureInterface()	bio::chemical::LinearStructureInterface	inlinevirtual
~Structure()	bio::chemical::Structure	virtual
~ThreadSafe()	bio::ThreadSafe	virtual
~UnorderedStructureInterface()	bio::chemical::UnorderedStructureInterface	inlinevirtual
~Wave()	bio::physical::Wave	virtual