bio::genetic::Expressor Member List

This is the complete list of members for bio::genetic::Expressor, including all inherited members.

UnorderedMotif< Property >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::AbstractMotif()	bio::chemical::AbstractMotif
UnorderedMotif< State >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::AbstractMotif()	bio::chemical::AbstractMotif
bio::molecular::Molecule::LinearMotif< Surface * >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::AbstractMotif()	bio::chemical::AbstractMotif
UnorderedMotif< TranscriptionFactor >::AbstractMotif()	bio::chemical::AbstractMotif
LinearMotif< Plasmid * >::AbstractMotif()	bio::chemical::AbstractMotif
LinearMotif< molecular::Protein * >::AbstractMotif()	bio::chemical::AbstractMotif
bio::molecular::Vesicle::LinearMotif< Molecule * >::AbstractMotif()	bio::chemical::AbstractMotif
Activate(StandardDimension proteinId)	bio::genetic::Expressor
Activate(Name proteinName)	bio::genetic::Expressor
Activate()	bio::genetic::Expressor	inline
Add(const T t)	bio::chemical::UnorderedStructureInterface	inline
Class< Expressor >::bio::UnorderedMotif< Property >::AddImplementation(const Property content)	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::AddImplementation(const State content)	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::AddImplementation(Surface * content)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
Class< Expressor >::UnorderedMotif< Surface * >::AddImplementation(const Surface * content)	bio::chemical::UnorderedMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::AddImplementation(const TranscriptionFactor content)	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::AddImplementation(Plasmid * content)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::AddImplementation(const Plasmid * content)	bio::chemical::UnorderedMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::AddImplementation(molecular::Protein * content)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
LinearMotif< molecular::UnorderedMotif< molecular::Protein * >::AddImplementation(const molecular::Protein * content)	bio::chemical::UnorderedMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::AddImplementation(Molecule * content)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
UnorderedMotif< Molecule * >::AddImplementation(const Molecule * content)	bio::chemical::UnorderedMotif< Molecule * >	inlinevirtual
AddToTranscriptome(const RNA *toExpress)	bio::genetic::Expressor	virtual
As()	bio::chemical::Atom	inline
As() const	bio::chemical::Atom	inline
AsAtom()	bio::physical::Wave	inlinevirtual
AsAtom() const	bio::physical::Wave	inlinevirtual
AsBonded()	bio::chemical::Atom	inline
AsBonded() const	bio::chemical::Atom	inline
AsBondedQuantum()	bio::chemical::Atom	inline
AsBondedQuantum() const	bio::chemical::Atom	inline
AssociateType(Id id, Wave *type)	bio::physical::Perspective< StandardDimension >	inlinevirtual
Class< Expressor >::bio::AsWave()	bio::physical::Class< T >	inlinevirtual
Class< Expressor >::bio::AsWave() const	bio::physical::Class< T >	inlinevirtual
Class< Expressor >::bio::Identifiable< StandardDimension >::AsWave()	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
Class< Expressor >::bio::Identifiable< StandardDimension >::AsWave() const	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
Class< Expressor >::bio::log::Writer::bio::AsWave()	bio::physical::Class< Filterable >	inlinevirtual
Class< Expressor >::bio::log::Writer::AsWave() const	bio::physical::Class< Filterable >	inlinevirtual
Class< Expressor >::bio::log::Writer::Class< Writer >::AsWave()	bio::physical::Class< Writer >	inlinevirtual
Class< Expressor >::bio::Class< Writer >::AsWave() const	bio::physical::Class< Writer >	inlinevirtual
bio::chemical::Atom::AsWave()	bio::physical::Class< Atom >	inlinevirtual
bio::chemical::Atom::AsWave() const	bio::physical::Class< Atom >	inlinevirtual
Atom(const Atom &other)	bio::chemical::Atom	explicit
Class< Expressor >::bio::Attenuate(const Wave *other)	bio::physical::Wave	virtual
Class< Expressor >::bio::chemical::Atom::Attenuate(const Wave *other)	bio::chemical::Atom	virtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::Attenuate(const physical::Wave *other)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::Attenuate(const physical::Wave *other)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::Attenuate(const physical::Wave *other)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::Attenuate(const physical::Wave *other)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS_WITH_CTOR_COMMON(chemical, Substance, &SubstancePerspective::Instance(), filter::Chemical()) BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical	bio::chemical::Substance
BIO_DISAMBIGUATE_ALL_CLASS_METHODS(genetic, Expressor) BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS(genetic	bio::genetic::Expressor
Class< Expressor >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(molecular, Expressor) Class(Expressor *object	bio::genetic::Class< Expressor >
Class< Expressor >::bio::molecular::Class::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, T) Class(T *object	bio::molecular::Class< T >
Class< Expressor >::bio::chemical::Class::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, T) Class(T *object	bio::chemical::Class< T >
Class< Expressor >::Identifiable< StandardDimension >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Identifiable< StandardDimension >) explicit Identifiable(Perspective< StandardDimension > *perspective	bio::physical::Identifiable< StandardDimension >
Class< Expressor >::bio::log::Writer::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Writer) Writer()	bio::log::Writer
Class< Expressor >::bio::physical::Filterable::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Filterable) Filterable()	bio::physical::Filterable
Class< Expressor >::bio::chemical::Atom::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Atom) explicit Atom()	bio::chemical::Atom
Class< Expressor >::bio::chemical::Substance::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, Substance) Class(Substance *object	bio::chemical::Class< Substance >
Class< Expressor >::bio::chemical::Substance::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< Property >) UnorderedMotif()	bio::chemical::UnorderedMotif< Property >	inline
Class< Expressor >::Class< UnorderedMotif< Property > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< Property >) Class(UnorderedMotif< Property > *object	bio::chemical::Class< UnorderedMotif< Property > >
Class< Expressor >::bio::chemical::Substance::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< State >) UnorderedMotif()	bio::chemical::UnorderedMotif< State >	inline
Class< Expressor >::Class< UnorderedMotif< State > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< State >) Class(UnorderedMotif< State > *object	bio::chemical::Class< UnorderedMotif< State > >
Class< Expressor >::bio::molecular::Molecule::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(molecular, Molecule) BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS(molecular	bio::molecular::Molecule
Class< Expressor >::Class< Molecule >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, Molecule) Class(Molecule *object	bio::molecular::Class< Molecule >
Class< Expressor >::bio::chemical::Class::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, T) Class(T *object	bio::chemical::Class< T >
Class< Expressor >::LinearMotif< Surface * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, LinearMotif< Surface * >) Class(LinearMotif< Surface * > *object	bio::chemical::Class< LinearMotif< Surface * > >
Class< Expressor >::LinearMotif< Surface * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< Surface * >) UnorderedMotif()	bio::chemical::UnorderedMotif< Surface * >	inline
Class< Expressor >::Class< UnorderedMotif< Surface * > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< Surface * >) Class(UnorderedMotif< Surface * > *object	bio::chemical::Class< UnorderedMotif< Surface * > >
UnorderedMotif< TranscriptionFactor >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< TranscriptionFactor >) UnorderedMotif()	bio::chemical::UnorderedMotif< TranscriptionFactor >	inline
UnorderedMotif< TranscriptionFactor >::Class< UnorderedMotif< TranscriptionFactor > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< TranscriptionFactor >) Class(UnorderedMotif< TranscriptionFactor > *object	bio::chemical::Class< UnorderedMotif< TranscriptionFactor > >
LinearMotif< Plasmid * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, LinearMotif< Plasmid * >) Class(LinearMotif< Plasmid * > *object	bio::chemical::Class< LinearMotif< Plasmid * > >
LinearMotif< Plasmid * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< Plasmid * >) UnorderedMotif()	bio::chemical::UnorderedMotif< Plasmid * >	inline
LinearMotif< Plasmid * >::Class< UnorderedMotif< Plasmid * > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< Plasmid * >) Class(UnorderedMotif< Plasmid * > *object	bio::chemical::Class< UnorderedMotif< Plasmid * > >
LinearMotif< molecular::Protein * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, LinearMotif< molecular::Protein * >) Class(LinearMotif< molecular::Protein * > *object	bio::chemical::Class< LinearMotif< molecular::Protein * > >
LinearMotif< molecular::Protein * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< molecular::Protein * >) UnorderedMotif()	bio::chemical::UnorderedMotif< molecular::Protein * >	inline
LinearMotif< molecular::Class< UnorderedMotif< molecular::Protein * > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< molecular::Protein * >) Class(UnorderedMotif< molecular::Protein * > *object	bio::chemical::Class< UnorderedMotif< molecular::Protein * > >
bio::molecular::Vesicle::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(molecular, Vesicle) BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS(molecular	bio::molecular::Vesicle
bio::Class< Vesicle >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, Vesicle) Class(Vesicle *object	bio::molecular::Class< Vesicle >
bio::chemical::Class::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, T) Class(T *object	bio::chemical::Class< T >
bio::LinearMotif< Molecule * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, LinearMotif< Molecule * >) Class(LinearMotif< Molecule * > *object	bio::chemical::Class< LinearMotif< Molecule * > >
LinearMotif< Molecule * >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical, UnorderedMotif< Molecule * >) UnorderedMotif()	bio::chemical::UnorderedMotif< Molecule * >	inline
Class< UnorderedMotif< Molecule * > >::BIO_DISAMBIGUATE_ALL_CLASS_METHODS(physical, UnorderedMotif< Molecule * >) Class(UnorderedMotif< Molecule * > *object	bio::chemical::Class< UnorderedMotif< Molecule * > >
Class< Expressor >::BIO_DISAMBIGUATE_REQUIRED_CLASS_METHODS(chemical, LinearMotif< Surface * >) BIO_DISAMBIGUATE_OPTIONAL_CLASS_METHODS(physical	bio::chemical::LinearMotif< Surface * >
LinearMotif< Plasmid * >::BIO_DISAMBIGUATE_REQUIRED_CLASS_METHODS(chemical, LinearMotif< Plasmid * >) BIO_DISAMBIGUATE_OPTIONAL_CLASS_METHODS(physical	bio::chemical::LinearMotif< Plasmid * >
LinearMotif< molecular::Protein * >::BIO_DISAMBIGUATE_REQUIRED_CLASS_METHODS(chemical, LinearMotif< molecular::Protein * >) BIO_DISAMBIGUATE_OPTIONAL_CLASS_METHODS(physical	bio::chemical::LinearMotif< molecular::Protein * >
bio::molecular::Vesicle::LinearMotif< Molecule * >::BIO_DISAMBIGUATE_REQUIRED_CLASS_METHODS(chemical, LinearMotif< Molecule * >) BIO_DISAMBIGUATE_OPTIONAL_CLASS_METHODS(physical	bio::chemical::LinearMotif< Molecule * >
BreakBond(T toDisassociate, BondType type=bond_type::Unknown())	bio::chemical::Atom	inline
BreakBondImplementation(Wave *toDisassociate, AtomicNumber id, BondType type)	bio::chemical::Atom	protectedvirtual
CacheProteins()	bio::genetic::Expressor	inlinevirtual
Class< Expressor >::bio::Class< Expressor >::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
Class< Expressor >::bio::Identifiable< StandardDimension >::Class(Identifiable< StandardDimension > *object, Symmetry *symmetry=NULL)	bio::physical::Class< Identifiable< StandardDimension > >	inline
Class< Expressor >::bio::log::Writer::bio::Class(Filterable *object, Symmetry *symmetry=NULL)	bio::physical::Class< Filterable >	inline
Class< Expressor >::bio::log::Writer::Class< Writer >::Class(Writer *object, Symmetry *symmetry=NULL)	bio::physical::Class< Writer >	inline
Class< Expressor >::bio::chemical::Atom::Class(Atom *object, Symmetry *symmetry=NULL)	bio::physical::Class< Atom >	inline
bio::chemical::Substance::Class< Substance >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
bio::chemical::Substance::UnorderedMotif< Property >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
bio::chemical::Substance::UnorderedMotif< State >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
bio::molecular::Molecule::Class< Molecule >::bio::Class< Molecule >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
bio::molecular::Molecule::LinearMotif< Surface * >::Class< LinearMotif< Surface * > >::bio::Class< LinearMotif< Surface * > >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
bio::molecular::Molecule::LinearMotif< Surface * >::UnorderedMotif< Surface * >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
UnorderedMotif< TranscriptionFactor >::bio::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
LinearMotif< Plasmid * >::Class< LinearMotif< Plasmid * > >::bio::Class< LinearMotif< Plasmid * > >::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::bio::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
LinearMotif< molecular::Protein * >::Class< LinearMotif< molecular::bio::Class< LinearMotif< molecular::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
LinearMotif< molecular::Protein * >::UnorderedMotif< molecular::Protein * >::bio::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
bio::molecular::Vesicle::Class< Vesicle >::bio::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
bio::molecular::Vesicle::LinearMotif< Molecule * >::Class< LinearMotif< Molecule * > >::bio::Class< LinearMotif< Molecule * > >::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
bio::molecular::Vesicle::LinearMotif< Molecule * >::UnorderedMotif< Molecule * >::bio::Class(T *object, Symmetry *symmetry=NULL)	bio::physical::Class< T >	inline
Clear()	bio::chemical::UnorderedStructureInterface	inline
Class< Expressor >::bio::UnorderedMotif< Property >::ClearImplementation()	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::ClearImplementation()	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::ClearImplementation()	bio::chemical::LinearMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::ClearImplementation()	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::ClearImplementation()	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::ClearImplementation()	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::ClearImplementation()	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
Class< Expressor >::bio::Clone() const	bio::physical::Class< T >	inlinevirtual
Class< Expressor >::bio::Identifiable< StandardDimension >::Clone() const	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
Class< Expressor >::bio::log::Writer::bio::Clone() const	bio::physical::Class< Filterable >	inlinevirtual
Class< Expressor >::bio::log::Writer::Class< Writer >::Clone() const	bio::physical::Class< Writer >	inlinevirtual
bio::chemical::Atom::Clone() const	bio::physical::Class< Atom >	inlinevirtual
CloneIntoName(Name name)	bio::physical::Identifiable< StandardDimension >	inline
Class< Expressor >::bio::UnorderedMotif< Property >::Contents typedef	bio::chemical::UnorderedMotif< Property >
Class< Expressor >::bio::UnorderedMotif< State >::Contents typedef	bio::chemical::UnorderedMotif< State >
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::Contents typedef	bio::chemical::LinearMotif< Surface * >
UnorderedMotif< TranscriptionFactor >::Contents typedef	bio::chemical::UnorderedMotif< TranscriptionFactor >
LinearMotif< Plasmid * >::Contents typedef	bio::chemical::LinearMotif< Plasmid * >
LinearMotif< molecular::Protein * >::Contents typedef	bio::chemical::LinearMotif< molecular::Protein * >
bio::molecular::Vesicle::LinearMotif< Molecule * >::Contents typedef	bio::chemical::LinearMotif< Molecule * >
Class< Expressor >::bio::Class< Expressor >::Convert(Wave *wave)	bio::physical::Class< T >	inline
Class< Expressor >::bio::Identifiable< StandardDimension >::Convert(Wave *wave)	bio::physical::Class< Identifiable< StandardDimension > >	inline
Class< Expressor >::bio::log::Writer::bio::Convert(Wave *wave)	bio::physical::Class< Filterable >	inline
Class< Expressor >::bio::log::Writer::Class< Writer >::Convert(Wave *wave)	bio::physical::Class< Writer >	inline
Class< Expressor >::bio::chemical::Atom::Convert(Wave *wave)	bio::physical::Class< Atom >	inline
bio::chemical::Substance::Class< Substance >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Convert(Wave *wave)	bio::physical::Class< T >	inline
bio::chemical::Substance::UnorderedMotif< Property >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Convert(Wave *wave)	bio::physical::Class< T >	inline
bio::chemical::Substance::UnorderedMotif< State >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Convert(Wave *wave)	bio::physical::Class< T >	inline
bio::molecular::Molecule::Class< Molecule >::bio::Class< Molecule >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Convert(Wave *wave)	bio::physical::Class< T >	inline
bio::molecular::Molecule::LinearMotif< Surface * >::Class< LinearMotif< Surface * > >::bio::Class< LinearMotif< Surface * > >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Convert(Wave *wave)	bio::physical::Class< T >	inline
bio::molecular::Molecule::LinearMotif< Surface * >::UnorderedMotif< Surface * >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Convert(Wave *wave)	bio::physical::Class< T >	inline
UnorderedMotif< TranscriptionFactor >::bio::Convert(Wave *wave)	bio::physical::Class< T >	inline
LinearMotif< Plasmid * >::Class< LinearMotif< Plasmid * > >::bio::Class< LinearMotif< Plasmid * > >::Convert(Wave *wave)	bio::physical::Class< T >	inline
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::bio::Convert(Wave *wave)	bio::physical::Class< T >	inline
LinearMotif< molecular::Protein * >::Class< LinearMotif< molecular::bio::Class< LinearMotif< molecular::Convert(Wave *wave)	bio::physical::Class< T >	inline
LinearMotif< molecular::Protein * >::UnorderedMotif< molecular::Protein * >::bio::Convert(Wave *wave)	bio::physical::Class< T >	inline
bio::molecular::Vesicle::Class< Vesicle >::bio::Convert(Wave *wave)	bio::physical::Class< T >	inline
bio::molecular::Vesicle::LinearMotif< Molecule * >::Class< LinearMotif< Molecule * > >::bio::Class< LinearMotif< Molecule * > >::Convert(Wave *wave)	bio::physical::Class< T >	inline
bio::molecular::Vesicle::LinearMotif< Molecule * >::UnorderedMotif< Molecule * >::bio::Convert(Wave *wave)	bio::physical::Class< T >	inline
Class< Expressor >::CreateImplementation(StandardDimension id)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::CreateImplementation(StandardDimension id)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::CreateImplementation(StandardDimension id)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::CreateImplementation(StandardDimension id)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
Define(Name varName)	bio::molecular::Molecule	inline
Define(Name varName)	bio::molecular::Molecule	inline
Define(Name varName, const T &assignment)	bio::molecular::Molecule	inline
Demodulate()	bio::physical::Wave	virtual
Demodulate() const	bio::physical::Wave	virtual
Disable()	bio::chemical::Substance	virtual
DisassociateType(Id id)	bio::physical::Perspective< StandardDimension >	inlinevirtual
Class< Expressor >::bio::Disattenuate(const Wave *other)	bio::physical::Wave	virtual
Class< Expressor >::bio::chemical::Atom::Disattenuate(const Wave *other)	bio::chemical::Atom	virtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::Disattenuate(const physical::Wave *other)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::Disattenuate(const physical::Wave *other)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::Disattenuate(const physical::Wave *other)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::Disattenuate(const physical::Wave *other)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
DuplicateFrom(Molecule *source, Name surface)	bio::molecular::Molecule	virtual
Class< Expressor >::Elementary(const Properties properties)	bio::chemical::Elementary< LinearMotif< Surface * > >	inline
Class< Expressor >::Elementary()	bio::chemical::Elementary< LinearMotif< Surface * > >	inline
LinearMotif< Plasmid * >::Elementary(const Properties properties)	bio::chemical::Elementary< LinearMotif< Plasmid * > >	inline
LinearMotif< Plasmid * >::Elementary()	bio::chemical::Elementary< LinearMotif< Plasmid * > >	inline
LinearMotif< molecular::Protein * >::Elementary(const Properties properties)	bio::chemical::Elementary< LinearMotif< molecular::Protein * > >	inline
LinearMotif< molecular::Protein * >::Elementary()	bio::chemical::Elementary< LinearMotif< molecular::Protein * > >	inline
bio::molecular::Vesicle::LinearMotif< Molecule * >::Elementary(const Properties properties)	bio::chemical::Elementary< LinearMotif< Molecule * > >	inline
LinearMotif< Molecule * >::Elementary()	bio::chemical::Elementary< LinearMotif< Molecule * > >	inline
Enable()	bio::chemical::Substance	virtual
ExpressGenes()	bio::genetic::Expressor	virtual
Expressor	bio::genetic::Expressor
ExternalLog(Filter logFilter, Level level, const char *format,...) const	bio::log::Writer
Class< Expressor >::bio::filter	bio::molecular::Class< T >
Class< Expressor >::bio::molecular::Molecule::Class< Molecule >::filter	bio::molecular::Class< Molecule >
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::Class< LinearMotif< Surface * > >::filter	bio::chemical::Class< LinearMotif< Surface * > >
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::UnorderedMotif< Surface * >::filter	bio::chemical::Class< UnorderedMotif< Surface * > >
UnorderedMotif< TranscriptionFactor >::filter	bio::chemical::Class< UnorderedMotif< TranscriptionFactor > >
LinearMotif< Plasmid * >::Class< LinearMotif< Plasmid * > >::filter	bio::chemical::Class< LinearMotif< Plasmid * > >
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::filter	bio::chemical::Class< UnorderedMotif< Plasmid * > >
LinearMotif< molecular::Protein * >::Class< LinearMotif< molecular::filter	bio::chemical::Class< LinearMotif< molecular::Protein * > >
LinearMotif< molecular::Protein * >::UnorderedMotif< molecular::Protein * >::filter	bio::chemical::Class< UnorderedMotif< molecular::Protein * > >
bio::molecular::Vesicle::Class< Vesicle >::filter	bio::molecular::Class< Vesicle >
bio::molecular::Vesicle::LinearMotif< Molecule * >::Class< LinearMotif< Molecule * > >::filter	bio::chemical::Class< LinearMotif< Molecule * > >
bio::molecular::Vesicle::LinearMotif< Molecule * >::UnorderedMotif< Molecule * >::filter	bio::chemical::Class< UnorderedMotif< Molecule * > >
filter::Genetic()) virtual ~Expressor()	bio::genetic::Expressor
Class< Expressor >::filter::Molecular()) Molecule(const Molecule &toCopy)	bio::molecular::Molecule
bio::molecular::Vesicle::filter::Molecular()) Vesicle(const Vesicle &toCopy)	bio::molecular::Vesicle
Filterable(Filter filter)	bio::physical::Filterable
Find(Id id)	bio::physical::Perspective< StandardDimension >	inline
Find(Id id) const	bio::physical::Perspective< StandardDimension >	inline
ForEach(ExcitationBase *excitation)	bio::chemical::LinearStructureInterface	inline
Class< Expressor >::ForEachImplementation(ExcitationBase *excitation)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::ForEachImplementation(ExcitationBase *excitation)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::ForEachImplementation(ExcitationBase *excitation)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::ForEachImplementation(ExcitationBase *excitation)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
FormBond(T toBond, BondType type=bond_type::Unknown())	bio::chemical::Atom	inline
FormBondImplementation(Wave *toBond, AtomicNumber id, BondType type)	bio::chemical::Atom	protectedvirtual
GetAll()	bio::chemical::UnorderedStructureInterface	inline
GetAll() const	bio::chemical::UnorderedStructureInterface	inline
GetAllAsVector()	bio::chemical::UnorderedStructureInterface	inline
GetAllAsVector() const	bio::chemical::UnorderedStructureInterface	inline
GetAllBonds()	bio::chemical::Atom
GetAllBonds() const	bio::chemical::Atom
GetAllImplementation()	bio::chemical::AbstractMotif	virtual
GetAllImplementation() const	bio::chemical::AbstractMotif	virtual
GetBonded(Valence position)	bio::chemical::Atom
GetBonded(Valence position) const	bio::chemical::Atom
GetBondPosition(AtomicNumber bondedId) const	bio::chemical::Atom
GetBondPosition(Name typeName) const	bio::chemical::Atom
GetBondPosition() const	bio::chemical::Atom	inline
GetBondType(Valence position) const	bio::chemical::Atom
GetBondType() const	bio::chemical::Atom	inline
GetById(StandardDimension id)	bio::chemical::LinearStructureInterface	inline
GetById(StandardDimension id) const	bio::chemical::LinearStructureInterface	inline
Class< Expressor >::GetByIdImplementation(StandardDimension id)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
Class< Expressor >::GetByIdImplementation(StandardDimension id) const	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::GetByIdImplementation(StandardDimension id)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< Plasmid * >::GetByIdImplementation(StandardDimension id) const	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::GetByIdImplementation(StandardDimension id)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
LinearMotif< molecular::Protein * >::GetByIdImplementation(StandardDimension id) const	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::GetByIdImplementation(StandardDimension id)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
LinearMotif< Molecule * >::GetByIdImplementation(StandardDimension id) const	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
GetByName(Name name)	bio::chemical::LinearStructureInterface	inline
GetByName(Name name) const	bio::chemical::LinearStructureInterface	inline
Class< Expressor >::GetByNameImplementation(Name name)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
Class< Expressor >::GetByNameImplementation(Name name) const	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::GetByNameImplementation(Name name)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< Plasmid * >::GetByNameImplementation(Name name) const	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::GetByNameImplementation(Name name)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
LinearMotif< molecular::Protein * >::GetByNameImplementation(Name name) const	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::GetByNameImplementation(Name name)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
LinearMotif< Molecule * >::GetByNameImplementation(Name name) const	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< Property >::Class< Expressor >::GetClassProperties()	bio::chemical::AbstractMotif	static
Class< Expressor >::bio::UnorderedMotif< State >::Class< Expressor >::GetClassProperties()	bio::chemical::AbstractMotif	static
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::GetClassProperties()	bio::chemical::LinearMotif< Surface * >	inlinestatic
LinearMotif< Plasmid * >::GetClassProperties()	bio::chemical::LinearMotif< Plasmid * >	inlinestatic
LinearMotif< molecular::Protein * >::GetClassProperties()	bio::chemical::LinearMotif< molecular::Protein * >	inlinestatic
bio::molecular::Vesicle::LinearMotif< Molecule * >::GetClassProperties()	bio::chemical::LinearMotif< Molecule * >	inlinestatic
GetCount() const	bio::chemical::UnorderedStructureInterface	inline
Class< Expressor >::bio::UnorderedMotif< Property >::GetCountImplementation() const	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::GetCountImplementation() const	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::GetCountImplementation() const	bio::chemical::UnorderedMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::GetCountImplementation() const	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::GetCountImplementation() const	bio::chemical::UnorderedMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::GetCountImplementation() const	bio::chemical::UnorderedMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::GetCountImplementation() const	bio::chemical::UnorderedMotif< Molecule * >	inlinevirtual
GetFilter() const	bio::physical::Filterable
GetIdFromName(Name name)	bio::physical::Perspective< StandardDimension >	inlinevirtual
GetIdWithoutCreation(Name name) const	bio::physical::Perspective< StandardDimension >	inlinevirtual
GetLogEngine()	bio::log::Writer
GetLogEngine() const	bio::log::Writer
GetNameFromId(Id id) const	bio::physical::Perspective< StandardDimension >	inlinevirtual
GetNewObjectFromId(Id id) const	bio::physical::Perspective< StandardDimension >	inlinevirtual
GetNewObjectFromIdAs(Id id)	bio::physical::Perspective< StandardDimension >	inline
GetNewObjectFromName(Name name)	bio::physical::Perspective< StandardDimension >	inlinevirtual
GetNewObjectFromNameAs(Name name)	bio::physical::Perspective< StandardDimension >	inline
GetNumMatching(const Container *other) const	bio::chemical::UnorderedStructureInterface	inline
Class< Expressor >::bio::UnorderedMotif< Property >::GetNumMatchingImplementation(const Container *other) const	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::GetNumMatchingImplementation(const Container *other) const	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::GetNumMatchingImplementation(const Container *other) const	bio::chemical::UnorderedMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::GetNumMatchingImplementation(const Container *other) const	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::GetNumMatchingImplementation(const Container *other) const	bio::chemical::UnorderedMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::GetNumMatchingImplementation(const Container *other) const	bio::chemical::UnorderedMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::GetNumMatchingImplementation(const Container *other) const	bio::chemical::UnorderedMotif< Molecule * >	inlinevirtual
GetNumUsedIds() const	bio::physical::Perspective< StandardDimension >	inlinevirtual
GetOrCreateById(StandardDimension id)	bio::chemical::LinearStructureInterface	inline
Class< Expressor >::GetOrCreateByIdImplementation(StandardDimension id)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::GetOrCreateByIdImplementation(StandardDimension id)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::GetOrCreateByIdImplementation(StandardDimension id)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::GetOrCreateByIdImplementation(StandardDimension id)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
GetOrCreateByName(Name name)	bio::chemical::LinearStructureInterface	inline
Class< Expressor >::GetOrCreateByNameImplementation(Name name)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::GetOrCreateByNameImplementation(Name name)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::GetOrCreateByNameImplementation(Name name)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::GetOrCreateByNameImplementation(Name name)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
GetPerspective() const	bio::physical::Observer< Perspective< StandardDimension > >	inlinevirtual
GetProperties() const	bio::physical::Wave	virtual
bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
Identifiable< StandardDimension >::bio::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
Identifiable< StandardDimension >::bio::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
Identifiable< StandardDimension >::bio::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
Class< Writer >::bio::bio::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
Class< Writer >::bio::bio::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
Class< Writer >::bio::bio::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
bio::chemical::Atom::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
bio::chemical::Atom::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
bio::chemical::Atom::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
Class< Substance >::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
Class< Substance >::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
Class< Substance >::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
UnorderedMotif< Property >::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
UnorderedMotif< Property >::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
UnorderedMotif< Property >::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
UnorderedMotif< State >::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
UnorderedMotif< State >::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
UnorderedMotif< State >::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
bio::molecular::Molecule::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
bio::molecular::Molecule::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
bio::molecular::Molecule::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
LinearMotif< Surface * >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
LinearMotif< Surface * >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
LinearMotif< Surface * >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
UnorderedMotif< Surface * >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
UnorderedMotif< Surface * >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
UnorderedMotif< Surface * >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
UnorderedMotif< TranscriptionFactor >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
UnorderedMotif< TranscriptionFactor >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
UnorderedMotif< TranscriptionFactor >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
LinearMotif< Plasmid * >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
LinearMotif< Plasmid * >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
LinearMotif< Plasmid * >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
UnorderedMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
UnorderedMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
UnorderedMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::LinearMotif< Plasmid * >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
LinearMotif< molecular::Protein * >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
LinearMotif< molecular::Protein * >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
LinearMotif< molecular::Protein * >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
UnorderedMotif< molecular::Protein * >::LinearMotif< molecular::LinearMotif< molecular::LinearMotif< molecular::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
UnorderedMotif< molecular::Protein * >::LinearMotif< molecular::LinearMotif< molecular::LinearMotif< molecular::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
UnorderedMotif< molecular::Protein * >::LinearMotif< molecular::LinearMotif< molecular::LinearMotif< molecular::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
Class< Vesicle >::bio::bio::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
Class< Vesicle >::bio::bio::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
Class< Vesicle >::bio::bio::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
LinearMotif< Molecule * >::bio::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
LinearMotif< Molecule * >::bio::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
LinearMotif< Molecule * >::bio::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
UnorderedMotif< Molecule * >::GetResonanceBetween(ConstWaves waves)	bio::physical::Wave	static
UnorderedMotif< Molecule * >::GetResonanceBetween(const Wave *wave1, const Wave *wave2)	bio::physical::Wave	static
UnorderedMotif< Molecule * >::GetResonanceBetween(const Wave *wave, const Properties &properties)	bio::physical::Wave	static
GetStringFrom(std::string separator=", ")	bio::chemical::UnorderedStructureInterface	inline
Class< Expressor >::bio::UnorderedMotif< Property >::GetStringFromImplementation(std::string separator=", ")	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::GetStringFromImplementation(std::string separator=", ")	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::GetStringFromImplementation(std::string separator=", ")	bio::chemical::LinearMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::GetStringFromImplementation(std::string separator=", ")	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::GetStringFromImplementation(std::string separator=", ")	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::GetStringFromImplementation(std::string separator=", ")	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::GetStringFromImplementation(std::string separator=", ")	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
Class< Expressor >::GetStructuralPerspective()	bio::chemical::LinearMotif< Surface * >	inline
Class< Expressor >::GetStructuralPerspective() const	bio::chemical::LinearMotif< Surface * >	inline
LinearMotif< Plasmid * >::GetStructuralPerspective()	bio::chemical::LinearMotif< Plasmid * >	inline
LinearMotif< Plasmid * >::GetStructuralPerspective() const	bio::chemical::LinearMotif< Plasmid * >	inline
LinearMotif< molecular::Protein * >::GetStructuralPerspective()	bio::chemical::LinearMotif< molecular::Protein * >	inline
LinearMotif< molecular::Protein * >::GetStructuralPerspective() const	bio::chemical::LinearMotif< molecular::Protein * >	inline
bio::molecular::Vesicle::LinearMotif< Molecule * >::GetStructuralPerspective()	bio::chemical::LinearMotif< Molecule * >	inline
LinearMotif< Molecule * >::GetStructuralPerspective() const	bio::chemical::LinearMotif< Molecule * >	inline
GetTypeFromId(Id id) const	bio::physical::Perspective< StandardDimension >	inlinevirtual
GetTypeFromIdAs(Id id) const	bio::physical::Perspective< StandardDimension >	inline
GetTypeFromName(Name name) const	bio::physical::Perspective< StandardDimension >	inlinevirtual
GetTypeFromNameAs(Name name) const	bio::physical::Perspective< StandardDimension >	inline
GetUniqueIdFor(Name name)	bio::physical::Perspective< StandardDimension >	inlinevirtual
Hadits typedef	bio::physical::Perspective< StandardDimension >
Has(T content) const	bio::chemical::UnorderedStructureInterface	inline
HasAll(const Container *contents) const	bio::chemical::UnorderedStructureInterface	inline
Class< Expressor >::bio::UnorderedMotif< Property >::HasAllImplementation(const Container *contents) const	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::HasAllImplementation(const Container *contents) const	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::HasAllImplementation(const Container *contents) const	bio::chemical::UnorderedMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::HasAllImplementation(const Container *contents) const	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::HasAllImplementation(const Container *contents) const	bio::chemical::UnorderedMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::HasAllImplementation(const Container *contents) const	bio::chemical::UnorderedMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::HasAllImplementation(const Container *contents) const	bio::chemical::UnorderedMotif< Molecule * >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< Property >::HasImplementation(const Property content) const	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::HasImplementation(const State content) const	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::HasImplementation(const Surface * &content) const	bio::chemical::LinearMotif< Surface * >	inlinevirtual
Class< Expressor >::UnorderedMotif< Surface * >::HasImplementation(const Surface * content) const	bio::chemical::UnorderedMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::HasImplementation(const TranscriptionFactor content) const	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::HasImplementation(const Plasmid * &content) const	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::HasImplementation(const Plasmid * content) const	bio::chemical::UnorderedMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::HasImplementation(const molecular::Protein * &content) const	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
LinearMotif< molecular::UnorderedMotif< molecular::Protein * >::HasImplementation(const molecular::Protein * content) const	bio::chemical::UnorderedMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::HasImplementation(const Molecule * &content) const	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
UnorderedMotif< Molecule * >::HasImplementation(const Molecule * content) const	bio::chemical::UnorderedMotif< Molecule * >	inlinevirtual
HasLogEngine() const	bio::log::Writer
Class< Expressor >::hasRegistered	bio::chemical::Elementary< LinearMotif< Surface * > >	static
LinearMotif< Plasmid * >::hasRegistered	bio::chemical::Elementary< LinearMotif< Plasmid * > >	static
LinearMotif< molecular::Protein * >::hasRegistered	bio::chemical::Elementary< LinearMotif< molecular::Protein * > >	static
bio::molecular::Vesicle::LinearMotif< Molecule * >::hasRegistered	bio::chemical::Elementary< LinearMotif< Molecule * > >	static
Class< Expressor >::bio::Id typedef	bio::physical::Identifiable< StandardDimension >
bio::molecular::Molecule::Perspective< StandardDimension >::Id typedef	bio::physical::Perspective< StandardDimension >
Class< Expressor >::bio::Ids typedef	bio::physical::Identifiable< StandardDimension >
bio::molecular::Molecule::Perspective< StandardDimension >::Ids typedef	bio::physical::Perspective< StandardDimension >
Import(const UnorderedMotif< T > *other)	bio::chemical::UnorderedStructureInterface	inline
Import(const std::vector< T > &other)	bio::chemical::UnorderedStructureInterface	inline
ImportAll(const physical::Wave *other)	bio::chemical::UnorderedStructureInterface	inline
Class< Expressor >::bio::UnorderedMotif< Property >::ImportImplementation(const UnorderedMotif< Property > *other)	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< Property >::bio::chemical::AbstractMotif::ImportImplementation(const void *other)	bio::chemical::AbstractMotif	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::ImportImplementation(const UnorderedMotif< State > *other)	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::ImportImplementation(const LinearMotif< Surface * > *other)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
Class< Expressor >::UnorderedMotif< Surface * >::ImportImplementation(const UnorderedMotif< Surface * > *other)	bio::chemical::UnorderedMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::ImportImplementation(const UnorderedMotif< TranscriptionFactor > *other)	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::ImportImplementation(const LinearMotif< Plasmid * > *other)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::ImportImplementation(const UnorderedMotif< Plasmid * > *other)	bio::chemical::UnorderedMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::ImportImplementation(const LinearMotif< molecular::Protein * > *other)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
LinearMotif< molecular::UnorderedMotif< molecular::Protein * >::ImportImplementation(const UnorderedMotif< molecular::Protein * > *other)	bio::chemical::UnorderedMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::ImportImplementation(const LinearMotif< Molecule * > *other)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
UnorderedMotif< Molecule * >::ImportImplementation(const UnorderedMotif< Molecule * > *other)	bio::chemical::UnorderedMotif< Molecule * >	inlinevirtual
Initialize(ByteStreams args)	bio::VirtualBase	protected
Initialize(ByteStream arg1)	bio::VirtualBase	protected
Initialize(ByteStream arg1, ByteStream arg2)	bio::VirtualBase	protected
Initialize(ByteStream arg1, ByteStream arg2, ByteStream arg3)	bio::VirtualBase	protected
Class< Expressor >::bio::Identifiable< StandardDimension >::InitializeImplementation(ByteStreams args)	bio::physical::Observer< Perspective< StandardDimension > >	inlineprotectedvirtual
bio::log::Writer::InitializeImplementation(ByteStreams args)	bio::log::Writer	protectedvirtual
Insert(T toAdd, const Position position=BOTTOM, const StandardDimension optionalPositionArg=0, const bool transferSubContents=false)	bio::chemical::LinearStructureInterface	inline
Class< Expressor >::InsertImplementation(Surface * toAdd, const Position position=BOTTOM, const StandardDimension optionalPositionArg=0, const bool transferSubContents=false)	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::InsertImplementation(Plasmid * toAdd, const Position position=BOTTOM, const StandardDimension optionalPositionArg=0, const bool transferSubContents=false)	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::InsertImplementation(molecular::Protein * toAdd, const Position position=BOTTOM, const StandardDimension optionalPositionArg=0, const bool transferSubContents=false)	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::InsertImplementation(Molecule * toAdd, const Position position=BOTTOM, const StandardDimension optionalPositionArg=0, const bool transferSubContents=false)	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
InvalidId()	bio::physical::Perspective< StandardDimension >	inlinestatic
InvalidName()	bio::physical::Perspective< StandardDimension >	inlinestatic
IsEnabled() const	bio::chemical::Substance	virtual
Class< Expressor >::LinearMotif(physical::Perspective< StandardDimension > *perspective=NULL)	bio::chemical::LinearMotif< Surface * >	inlineexplicit
Class< Expressor >::LinearMotif(const Contents *contents, physical::Perspective< StandardDimension > *perspective=NULL)	bio::chemical::LinearMotif< Surface * >	inlineexplicit
Class< Expressor >::LinearMotif(const LinearMotif< Surface * > &toCopy)	bio::chemical::LinearMotif< Surface * >	inline
LinearMotif< Plasmid * >::LinearMotif(physical::Perspective< StandardDimension > *perspective=NULL)	bio::chemical::LinearMotif< Plasmid * >	inlineexplicit
LinearMotif< Plasmid * >::LinearMotif(const Contents *contents, physical::Perspective< StandardDimension > *perspective=NULL)	bio::chemical::LinearMotif< Plasmid * >	inlineexplicit
LinearMotif< Plasmid * >::LinearMotif(const LinearMotif< Plasmid * > &toCopy)	bio::chemical::LinearMotif< Plasmid * >	inline
LinearMotif< molecular::Protein * >::LinearMotif(physical::Perspective< StandardDimension > *perspective=NULL)	bio::chemical::LinearMotif< molecular::Protein * >	inlineexplicit
LinearMotif< molecular::Protein * >::LinearMotif(const Contents *contents, physical::Perspective< StandardDimension > *perspective=NULL)	bio::chemical::LinearMotif< molecular::Protein * >	inlineexplicit
LinearMotif< molecular::Protein * >::LinearMotif(const LinearMotif< molecular::Protein * > &toCopy)	bio::chemical::LinearMotif< molecular::Protein * >	inline
bio::molecular::Vesicle::LinearMotif< Molecule * >::LinearMotif(physical::Perspective< StandardDimension > *perspective=NULL)	bio::chemical::LinearMotif< Molecule * >	inlineexplicit
LinearMotif< Molecule * >::LinearMotif(const Contents *contents, physical::Perspective< StandardDimension > *perspective=NULL)	bio::chemical::LinearMotif< Molecule * >	inlineexplicit
LinearMotif< Molecule * >::LinearMotif(const LinearMotif< Molecule * > &toCopy)	bio::chemical::LinearMotif< Molecule * >	inline
LinearStructureInterface()	bio::chemical::LinearStructureInterface	inline
LockThread() const	bio::ThreadSafe
Log(Level level, const char *format,...) const	bio::log::Writer	protected
m_bonds	bio::chemical::Atom	protected
UnorderedMotif< Property >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_contents	bio::chemical::AbstractMotif	mutableprotected
UnorderedMotif< State >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_contents	bio::chemical::AbstractMotif	mutableprotected
bio::molecular::Molecule::LinearMotif< Surface * >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_contents	bio::chemical::AbstractMotif	mutableprotected
UnorderedMotif< TranscriptionFactor >::m_contents	bio::chemical::AbstractMotif	mutableprotected
LinearMotif< Plasmid * >::m_contents	bio::chemical::AbstractMotif	mutableprotected
LinearMotif< molecular::Protein * >::m_contents	bio::chemical::AbstractMotif	mutableprotected
bio::molecular::Vesicle::LinearMotif< Molecule * >::m_contents	bio::chemical::AbstractMotif	mutableprotected
m_filter	bio::physical::Filterable	protected
m_hadits	bio::physical::Perspective< StandardDimension >	protected
m_hasBeenInitialized	bio::VirtualBase	protected
m_id	bio::physical::Identifiable< StandardDimension >
m_nextId	bio::physical::Perspective< StandardDimension >	protected
Class< Expressor >::bio::Class< Expressor >::m_object	bio::physical::Class< T >	protected
Class< Expressor >::bio::Identifiable< StandardDimension >::m_object	bio::physical::Class< Identifiable< StandardDimension > >	protected
Class< Expressor >::bio::log::Writer::bio::m_object	bio::physical::Class< Filterable >	protected
Class< Expressor >::bio::log::Writer::Class< Writer >::m_object	bio::physical::Class< Writer >	protected
Class< Expressor >::bio::chemical::Atom::m_object	bio::physical::Class< Atom >	protected
bio::chemical::Substance::Class< Substance >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_object	bio::physical::Class< T >	protected
bio::chemical::Substance::UnorderedMotif< Property >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_object	bio::physical::Class< T >	protected
bio::chemical::Substance::UnorderedMotif< State >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_object	bio::physical::Class< T >	protected
bio::molecular::Molecule::Class< Molecule >::bio::Class< Molecule >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_object	bio::physical::Class< T >	protected
bio::molecular::Molecule::LinearMotif< Surface * >::Class< LinearMotif< Surface * > >::bio::Class< LinearMotif< Surface * > >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_object	bio::physical::Class< T >	protected
bio::molecular::Molecule::LinearMotif< Surface * >::UnorderedMotif< Surface * >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_object	bio::physical::Class< T >	protected
UnorderedMotif< TranscriptionFactor >::bio::m_object	bio::physical::Class< T >	protected
LinearMotif< Plasmid * >::Class< LinearMotif< Plasmid * > >::bio::Class< LinearMotif< Plasmid * > >::m_object	bio::physical::Class< T >	protected
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::bio::m_object	bio::physical::Class< T >	protected
LinearMotif< molecular::Protein * >::Class< LinearMotif< molecular::bio::Class< LinearMotif< molecular::m_object	bio::physical::Class< T >	protected
LinearMotif< molecular::Protein * >::UnorderedMotif< molecular::Protein * >::bio::m_object	bio::physical::Class< T >	protected
bio::molecular::Vesicle::Class< Vesicle >::bio::m_object	bio::physical::Class< T >	protected
bio::molecular::Vesicle::LinearMotif< Molecule * >::Class< LinearMotif< Molecule * > >::bio::Class< LinearMotif< Molecule * > >::m_object	bio::physical::Class< T >	protected
bio::molecular::Vesicle::LinearMotif< Molecule * >::UnorderedMotif< Molecule * >::bio::m_object	bio::physical::Class< T >	protected
Class< Expressor >::m_perspective	bio::chemical::LinearMotif< Surface * >
LinearMotif< Plasmid * >::m_perspective	bio::chemical::LinearMotif< Plasmid * >
LinearMotif< molecular::Protein * >::m_perspective	bio::chemical::LinearMotif< molecular::Protein * >
bio::molecular::Vesicle::LinearMotif< Molecule * >::m_perspective	bio::chemical::LinearMotif< Molecule * >
bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
Identifiable< StandardDimension >::bio::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
bio::log::Writer::Class< Writer >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
bio::chemical::Atom::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
bio::chemical::Substance::Class< Substance >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
bio::chemical::Substance::UnorderedMotif< Property >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
bio::chemical::Substance::UnorderedMotif< State >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
bio::molecular::Molecule::bio::Class< Molecule >::Class< Molecule >::Class< Molecule >::Class< Molecule >::Class< Molecule >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
bio::molecular::Molecule::LinearMotif< Surface * >::bio::Class< LinearMotif< Surface * > >::Class< LinearMotif< Surface * > >::Class< LinearMotif< Surface * > >::Class< LinearMotif< Surface * > >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
bio::molecular::Molecule::LinearMotif< Surface * >::UnorderedMotif< Surface * >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_signal	bio::physical::Wave	protected
UnorderedMotif< TranscriptionFactor >::bio::m_signal	bio::physical::Wave	protected
LinearMotif< Plasmid * >::bio::Class< LinearMotif< Plasmid * > >::Class< LinearMotif< Plasmid * > >::Class< LinearMotif< Plasmid * > >::Class< LinearMotif< Plasmid * > >::m_signal	bio::physical::Wave	protected
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::bio::m_signal	bio::physical::Wave	protected
LinearMotif< molecular::Protein * >::bio::Class< LinearMotif< molecular::Class< LinearMotif< molecular::Class< LinearMotif< molecular::Class< LinearMotif< molecular::m_signal	bio::physical::Wave	protected
LinearMotif< molecular::Protein * >::UnorderedMotif< molecular::Protein * >::bio::m_signal	bio::physical::Wave	protected
bio::molecular::Vesicle::Class< Vesicle >::bio::m_signal	bio::physical::Wave	protected
bio::molecular::Vesicle::LinearMotif< Molecule * >::bio::Class< LinearMotif< Molecule * > >::Class< LinearMotif< Molecule * > >::Class< LinearMotif< Molecule * > >::Class< LinearMotif< Molecule * > >::m_signal	bio::physical::Wave	protected
bio::molecular::Vesicle::LinearMotif< Molecule * >::UnorderedMotif< Molecule * >::bio::m_signal	bio::physical::Wave	protected
bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
Identifiable< StandardDimension >::bio::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
bio::log::Writer::Class< Writer >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
bio::chemical::Atom::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
bio::chemical::Substance::Class< Substance >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
bio::chemical::Substance::UnorderedMotif< Property >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
bio::chemical::Substance::UnorderedMotif< State >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
bio::molecular::Molecule::bio::Class< Molecule >::Class< Molecule >::Class< Molecule >::Class< Molecule >::Class< Molecule >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
bio::molecular::Molecule::LinearMotif< Surface * >::bio::Class< LinearMotif< Surface * > >::Class< LinearMotif< Surface * > >::Class< LinearMotif< Surface * > >::Class< LinearMotif< Surface * > >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
bio::molecular::Molecule::LinearMotif< Surface * >::UnorderedMotif< Surface * >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::m_symmetry	bio::physical::Wave	protected
UnorderedMotif< TranscriptionFactor >::bio::m_symmetry	bio::physical::Wave	protected
LinearMotif< Plasmid * >::bio::Class< LinearMotif< Plasmid * > >::Class< LinearMotif< Plasmid * > >::Class< LinearMotif< Plasmid * > >::Class< LinearMotif< Plasmid * > >::m_symmetry	bio::physical::Wave	protected
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::bio::m_symmetry	bio::physical::Wave	protected
LinearMotif< molecular::Protein * >::bio::Class< LinearMotif< molecular::Class< LinearMotif< molecular::Class< LinearMotif< molecular::Class< LinearMotif< molecular::m_symmetry	bio::physical::Wave	protected
LinearMotif< molecular::Protein * >::UnorderedMotif< molecular::Protein * >::bio::m_symmetry	bio::physical::Wave	protected
bio::molecular::Vesicle::Class< Vesicle >::bio::m_symmetry	bio::physical::Wave	protected
bio::molecular::Vesicle::LinearMotif< Molecule * >::bio::Class< LinearMotif< Molecule * > >::Class< LinearMotif< Molecule * > >::Class< LinearMotif< Molecule * > >::Class< LinearMotif< Molecule * > >::m_symmetry	bio::physical::Wave	protected
bio::molecular::Vesicle::LinearMotif< Molecule * >::UnorderedMotif< Molecule * >::bio::m_symmetry	bio::physical::Wave	protected
m_transcriptome	bio::genetic::Expressor	protected
Modulate(Wave *signal)	bio::physical::Wave	virtual
molecular::VesiclePerspective::Instance()	bio::genetic::Expressor
Molecule	bio::molecular::Molecule
MoleculePerspective::Instance()	bio::molecular::Molecule
Observer(Perspective *perspective=NULL)	bio::physical::Observer< Perspective< StandardDimension > >	inlineexplicit
Observer(const Observer &other)	bio::physical::Observer< Perspective< StandardDimension > >	inline
operator Atom *()	bio::physical::Class< Atom >	inlinevirtual
operator Filterable *()	bio::physical::Class< Filterable >	inlinevirtual
operator Identifiable< StandardDimension > *()	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
operator T()	bio::chemical::Atom	inline
operator T*()	bio::physical::Class< T >	inlinevirtual
Class< Expressor >::bio::operator Wave *()	bio::physical::Class< T >	inlinevirtual
Class< Expressor >::bio::Identifiable< StandardDimension >::operator Wave *()	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
Class< Expressor >::bio::log::Writer::bio::operator Wave *()	bio::physical::Class< Filterable >	inlinevirtual
Class< Expressor >::bio::log::Writer::Class< Writer >::operator Wave *()	bio::physical::Class< Writer >	inlinevirtual
bio::chemical::Atom::operator Wave *()	bio::physical::Class< Atom >	inlinevirtual
operator Writer *()	bio::physical::Class< Writer >	inlinevirtual
operator()(StandardDimension surfaceId)	bio::molecular::Molecule	virtual
operator()(StandardDimension surfaceId) const	bio::molecular::Molecule	virtual
operator()(StandardDimension surfaceId)	bio::molecular::Molecule	inline
operator()(Name name)	bio::molecular::Molecule	virtual
operator()(Name name) const	bio::molecular::Molecule	virtual
operator()(Name surfaceName)	bio::molecular::Molecule	inline
operator*(Wave *signal)	bio::physical::Wave	virtual
operator*()	bio::physical::Wave	virtual
operator*() const	bio::physical::Wave	virtual
operator+(const Wave *other)	bio::physical::Wave	virtual
operator-(const Wave *other)	bio::physical::Wave	virtual
operator<<(Surface *source)	bio::molecular::Molecule	virtual
operator<<(Molecule *source)	bio::molecular::Molecule	virtual
operator<<=(Vesicle *source)	bio::molecular::Vesicle	virtual
operator>>(Surface *target)	bio::molecular::Molecule	virtual
operator>>(Molecule *target)	bio::molecular::Molecule	virtual
operator>>=(Vesicle *target)	bio::molecular::Vesicle	virtual
operator[](StandardDimension moleculeId)	bio::molecular::Vesicle	virtual
operator[](StandardDimension moleculeId) const	bio::molecular::Vesicle	virtual
operator[](StandardDimension moleculeId)	bio::molecular::Vesicle	inline
operator[](Name moleculeName)	bio::molecular::Vesicle	virtual
operator[](Name moleculeName) const	bio::molecular::Vesicle	virtual
operator[](Name moleculeName)	bio::molecular::Vesicle	inline
operator|(Symmetry *symmetry)	bio::physical::Wave	virtual
Class< Expressor >::bio::Perspective typedef	bio::physical::Observer< Perspective< StandardDimension > >
bio::molecular::Molecule::Perspective< StandardDimension >::Perspective()	bio::physical::Perspective< StandardDimension >	inline
Class< Expressor >::perspective	bio::genetic::Class< Expressor >
UnorderedMotif< TranscriptionFactor >::perspective	bio::chemical::Class< UnorderedMotif< TranscriptionFactor > >
LinearMotif< Plasmid * >::Class< LinearMotif< Plasmid * > >::perspective	bio::chemical::Class< LinearMotif< Plasmid * > >
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::perspective	bio::chemical::Class< UnorderedMotif< Plasmid * > >
LinearMotif< molecular::Protein * >::Class< LinearMotif< molecular::perspective	bio::chemical::Class< LinearMotif< molecular::Protein * > >
LinearMotif< molecular::Protein * >::UnorderedMotif< molecular::Protein * >::perspective	bio::chemical::Class< UnorderedMotif< molecular::Protein * > >
bio::molecular::Vesicle::Class< Vesicle >::perspective	bio::molecular::Class< Vesicle >
bio::molecular::Vesicle::LinearMotif< Molecule * >::Class< LinearMotif< Molecule * > >::perspective	bio::chemical::Class< LinearMotif< Molecule * > >
bio::molecular::Vesicle::LinearMotif< Molecule * >::UnorderedMotif< Molecule * >::perspective	bio::chemical::Class< UnorderedMotif< Molecule * > >
Class< Expressor >::RegisterProperties(const Properties properties)	bio::chemical::Elementary< LinearMotif< Surface * > >	inline
LinearMotif< Plasmid * >::RegisterProperties(const Properties properties)	bio::chemical::Elementary< LinearMotif< Plasmid * > >	inline
LinearMotif< molecular::Protein * >::RegisterProperties(const Properties properties)	bio::chemical::Elementary< LinearMotif< molecular::Protein * > >	inline
bio::molecular::Vesicle::LinearMotif< Molecule * >::RegisterProperties(const Properties properties)	bio::chemical::Elementary< LinearMotif< Molecule * > >	inline
Class< Expressor >::bio::Reify(Symmetry *symmetry)	bio::physical::Wave	virtual
Class< Expressor >::bio::log::Writer::Reify(Symmetry *symmetry)	bio::physical::Filterable	virtual
Class< Expressor >::bio::chemical::Atom::Reify(physical::Symmetry *symmetry)	bio::chemical::Atom	virtual
bio::molecular::Molecule::Reify(physical::Symmetry *symmetry)	bio::molecular::Molecule	virtual
Remove(const T t)	bio::chemical::UnorderedStructureInterface	inline
Class< Expressor >::bio::UnorderedMotif< Property >::RemoveImplementation(const Property content)	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::RemoveImplementation(const State content)	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::RemoveImplementation(const Surface * content)	bio::chemical::UnorderedMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::RemoveImplementation(const TranscriptionFactor content)	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::RemoveImplementation(const Plasmid * content)	bio::chemical::UnorderedMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::RemoveImplementation(const molecular::Protein * content)	bio::chemical::UnorderedMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::RemoveImplementation(const Molecule * content)	bio::chemical::UnorderedMotif< Molecule * >	inlinevirtual
RotateTo(StandardDimension surfaceId)	bio::molecular::Molecule	virtual
RotateTo(StandardDimension surfaceId) const	bio::molecular::Molecule	virtual
RotateTo(StandardDimension surfaceId) const	bio::molecular::Molecule	inline
RotateTo(Name surfaceName)	bio::molecular::Molecule	virtual
RotateTo(Name surfaceName) const	bio::molecular::Molecule	virtual
RotateTo(Name surfaceName) const	bio::molecular::Molecule	inline
SetFilter(Filter filter)	bio::physical::Filterable	virtual
SetLogEngine(Engine *logEngine)	bio::log::Writer	virtual
SetPerspective(Perspective *perspective)	bio::physical::Observer< Perspective< StandardDimension > >	inlinevirtual
Class< Expressor >::bio::Spin() const	bio::physical::Wave	virtual
Class< Expressor >::bio::log::Writer::Spin() const	bio::physical::Filterable	virtual
Class< Expressor >::bio::chemical::Atom::Spin() const	bio::chemical::Atom	virtual
bio::molecular::Molecule::Spin() const	bio::molecular::Molecule	virtual
Structure()	bio::chemical::Structure
Substance(const typename UnorderedMotif< Property >::Contents *properties, const typename UnorderedMotif< State >::Contents *states)	bio::chemical::Substance
ThreadSafe()	bio::ThreadSafe
ThreadSafe(const ThreadSafe &toCopy)	bio::ThreadSafe
TransferFrom(Molecule *source, Name surface)	bio::molecular::Molecule	virtual
Translate(const RNA *mRNA)	bio::genetic::Expressor	virtual
UnlockThread() const	bio::ThreadSafe
Class< Expressor >::bio::UnorderedMotif< Property >::UnorderedMotif(const Contents *contents)	bio::chemical::UnorderedMotif< Property >	inline
Class< Expressor >::bio::UnorderedMotif< Property >::UnorderedMotif(const UnorderedMotif< Property > *toCopy)	bio::chemical::UnorderedMotif< Property >	inline
Class< Expressor >::bio::UnorderedMotif< State >::UnorderedMotif(const Contents *contents)	bio::chemical::UnorderedMotif< State >	inline
Class< Expressor >::bio::UnorderedMotif< State >::UnorderedMotif(const UnorderedMotif< State > *toCopy)	bio::chemical::UnorderedMotif< State >	inline
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::UnorderedMotif(const Contents *contents)	bio::chemical::UnorderedMotif< Surface * >	inline
Class< Expressor >::LinearMotif< Surface * >::UnorderedMotif(const UnorderedMotif< Surface * > *toCopy)	bio::chemical::UnorderedMotif< Surface * >	inline
UnorderedMotif< TranscriptionFactor >::UnorderedMotif(const Contents *contents)	bio::chemical::UnorderedMotif< TranscriptionFactor >	inline
UnorderedMotif< TranscriptionFactor >::UnorderedMotif(const UnorderedMotif< TranscriptionFactor > *toCopy)	bio::chemical::UnorderedMotif< TranscriptionFactor >	inline
LinearMotif< Plasmid * >::UnorderedMotif(const Contents *contents)	bio::chemical::UnorderedMotif< Plasmid * >	inline
LinearMotif< Plasmid * >::UnorderedMotif(const UnorderedMotif< Plasmid * > *toCopy)	bio::chemical::UnorderedMotif< Plasmid * >	inline
LinearMotif< molecular::Protein * >::UnorderedMotif(const Contents *contents)	bio::chemical::UnorderedMotif< molecular::Protein * >	inline
LinearMotif< molecular::Protein * >::UnorderedMotif(const UnorderedMotif< molecular::Protein * > *toCopy)	bio::chemical::UnorderedMotif< molecular::Protein * >	inline
bio::molecular::Vesicle::LinearMotif< Molecule * >::UnorderedMotif(const Contents *contents)	bio::chemical::UnorderedMotif< Molecule * >	inline
LinearMotif< Molecule * >::UnorderedMotif(const UnorderedMotif< Molecule * > *toCopy)	bio::chemical::UnorderedMotif< Molecule * >	inline
UnorderedStructureInterface()	bio::chemical::UnorderedStructureInterface	inline
Use(Name varName, T *varPtr)	bio::molecular::Molecule	inline
Vesicle	bio::molecular::Vesicle
VesiclePerspective::Instance()	bio::molecular::Vesicle
VirtualBase()	bio::VirtualBase	protected
bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
Identifiable< StandardDimension >::bio::bio::bio::bio::bio::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::log::Writer::Class< Writer >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::chemical::Atom::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::chemical::Substance::Class< Substance >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::chemical::Substance::UnorderedMotif< Property >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::chemical::Substance::UnorderedMotif< State >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::molecular::Molecule::bio::Class< Molecule >::Class< Molecule >::Class< Molecule >::Class< Molecule >::Class< Molecule >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::molecular::Molecule::LinearMotif< Surface * >::bio::Class< LinearMotif< Surface * > >::Class< LinearMotif< Surface * > >::Class< LinearMotif< Surface * > >::Class< LinearMotif< Surface * > >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::molecular::Molecule::LinearMotif< Surface * >::UnorderedMotif< Surface * >::bio::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Class< Expressor >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
UnorderedMotif< TranscriptionFactor >::bio::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
LinearMotif< Plasmid * >::bio::Class< LinearMotif< Plasmid * > >::Class< LinearMotif< Plasmid * > >::Class< LinearMotif< Plasmid * > >::Class< LinearMotif< Plasmid * > >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
LinearMotif< Plasmid * >::UnorderedMotif< Plasmid * >::bio::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
LinearMotif< molecular::Protein * >::bio::Class< LinearMotif< molecular::Class< LinearMotif< molecular::Class< LinearMotif< molecular::Class< LinearMotif< molecular::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
LinearMotif< molecular::Protein * >::UnorderedMotif< molecular::Protein * >::bio::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::molecular::Vesicle::Class< Vesicle >::bio::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::molecular::Vesicle::LinearMotif< Molecule * >::bio::Class< LinearMotif< Molecule * > >::Class< LinearMotif< Molecule * > >::Class< LinearMotif< Molecule * > >::Class< LinearMotif< Molecule * > >::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
bio::molecular::Vesicle::LinearMotif< Molecule * >::UnorderedMotif< Molecule * >::bio::Wave(Symmetry *symmetry=NULL)	bio::physical::Wave
Writer(Engine *logEngine, Filter logFilter)	bio::log::Writer
~AbstractMotif()	bio::chemical::AbstractMotif	virtual
~Atom()	bio::chemical::Atom	virtual
Class< Expressor >::bio::~Class()	bio::physical::Class< T >	inlinevirtual
Class< Expressor >::bio::Identifiable< StandardDimension >::~Class()	bio::physical::Class< Identifiable< StandardDimension > >	inlinevirtual
Class< Expressor >::bio::log::Writer::bio::~Class()	bio::physical::Class< Filterable >	inlinevirtual
Class< Expressor >::bio::log::Writer::Class< Writer >::~Class()	bio::physical::Class< Writer >	inlinevirtual
bio::chemical::Atom::~Class()	bio::physical::Class< Atom >	inlinevirtual
Class< Expressor >::~Elementary()	bio::chemical::Elementary< LinearMotif< Surface * > >	inlinevirtual
LinearMotif< Plasmid * >::~Elementary()	bio::chemical::Elementary< LinearMotif< Plasmid * > >	inlinevirtual
LinearMotif< molecular::Protein * >::~Elementary()	bio::chemical::Elementary< LinearMotif< molecular::Protein * > >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::~Elementary()	bio::chemical::Elementary< LinearMotif< Molecule * > >	inlinevirtual
~Filterable()	bio::physical::Filterable	virtual
Class< Expressor >::~LinearMotif()	bio::chemical::LinearMotif< Surface * >	inlinevirtual
LinearMotif< Plasmid * >::~LinearMotif()	bio::chemical::LinearMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::~LinearMotif()	bio::chemical::LinearMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::~LinearMotif()	bio::chemical::LinearMotif< Molecule * >	inlinevirtual
~LinearStructureInterface()	bio::chemical::LinearStructureInterface	inlinevirtual
~Molecule()	bio::molecular::Molecule	virtual
~Observer()	bio::physical::Observer< Perspective< StandardDimension > >	inlinevirtual
~Perspective()	bio::physical::Perspective< StandardDimension >	inlinevirtual
~Structure()	bio::chemical::Structure	virtual
~Substance()	bio::chemical::Substance	virtual
~ThreadSafe()	bio::ThreadSafe	virtual
Class< Expressor >::bio::UnorderedMotif< Property >::~UnorderedMotif()	bio::chemical::UnorderedMotif< Property >	inlinevirtual
Class< Expressor >::bio::UnorderedMotif< State >::~UnorderedMotif()	bio::chemical::UnorderedMotif< State >	inlinevirtual
Class< Expressor >::bio::molecular::Molecule::LinearMotif< Surface * >::~UnorderedMotif()	bio::chemical::UnorderedMotif< Surface * >	inlinevirtual
UnorderedMotif< TranscriptionFactor >::~UnorderedMotif()	bio::chemical::UnorderedMotif< TranscriptionFactor >	inlinevirtual
LinearMotif< Plasmid * >::~UnorderedMotif()	bio::chemical::UnorderedMotif< Plasmid * >	inlinevirtual
LinearMotif< molecular::Protein * >::~UnorderedMotif()	bio::chemical::UnorderedMotif< molecular::Protein * >	inlinevirtual
bio::molecular::Vesicle::LinearMotif< Molecule * >::~UnorderedMotif()	bio::chemical::UnorderedMotif< Molecule * >	inlinevirtual
~UnorderedStructureInterface()	bio::chemical::UnorderedStructureInterface	inlinevirtual
~Vesicle()	bio::molecular::Vesicle	virtual
~VirtualBase()	bio::VirtualBase	protectedvirtual
~Wave()	bio::physical::Wave	virtual
~Writer()	bio::log::Writer	virtual