bio::genetic::diagnostics Namespace Reference

Functions
bool	BondDiagEnabled ()
void	DiagBondVisitor (const chemical::Bond &bond, void *)
void	DumpBonds (const char *tag, Pointer< physical::Wave > wave)
template<typename T >
void	DumpResolution (const char *tag, Pointer< physical::Wave > wave)
void	DumpRegistries (const char *tag)

Function Documentation

BondDiagEnabled()

bool bio::genetic::diagnostics::BondDiagEnabled ( )

inline

Returns

true iff BIO_BOND_DIAG is set in the environment (cached once).

DiagBondVisitor()

void bio::genetic::diagnostics::DiagBondVisitor ( const chemical::Bond &  bond, void *    )

inline

ForEachBond visitor: prints one line per bond (id, type, bonded Wave*).

DumpBonds()

void bio::genetic::diagnostics::DumpBonds ( const char *  tag, Pointer< physical::Wave >  wave  )

inline

Dump every bond id present on wave's Atom.

DumpRegistries()

void bio::genetic::diagnostics::DumpRegistries ( const char *  tag )

inline

Dump the identity (address + used-id count) of the registries that govern bond resolution, plus the bond ids of the canonical install types and the list of every Plasmid the PlasmidPerspective has registered. A second, divergent address for any of these across the process is a multiply- instantiated-registry bug.

DumpResolution()

template<typename T >

void bio::genetic::diagnostics::DumpResolution	(	const char *	tag,
		Pointer< physical::Wave >	wave
	)

For a Wave, dump the static bond id of T, whether As< T > resolves on this Wave's Atom, and the full bond-id list. T is the requested bonded type.