Genome.h

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/*
 * This file is a part of the Biology project by eons LLC.
 * Biology (aka Develop Biology) is a framework for approaching software
 * development from a natural sciences perspective.
 *
 * Copyright (C) 2022 Séon O'Shannon & eons LLC
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <https://www.gnu.org/licenses/>.
 */
 
#pragma once
 
#include "Expressor.h"
 
namespace bio {
namespace genetic {
 
class GenomeImplementation :
    public Class< GenomeImplementation >,
    public Expressor,
    virtual public ThreadSafe
{
public:
    BIO_DISAMBIGUATE_ALL_CLASS_METHODS(genetic,
        GenomeImplementation)
 
    GenomeImplementation();
 
    virtual ~GenomeImplementation();
 
    virtual void CacheProteins();
 
    virtual StandardDimension RegisterPlasmid(Plasmid* toRegister);
 
    virtual Plasmid* FetchPlasmid(StandardDimension plasmidId);
 
    virtual Plasmid* FetchPlasmid(Name plasmidName);
 
protected:
    molecular::Protein* mc_registerPlasmid;
    molecular::Protein* mc_fetchPlasmid;
    StandardDimension mc_registrationSite;
    StandardDimension mc_nameSite;
    StandardDimension mc_idSite;
    StandardDimension mc_fetchSite;
};
 
BIO_SINGLETON(Genome,
    GenomeImplementation)
 
} //genetic namespace
} //bio namespace