Protein.h

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/*
 * This file is a part of the Biology project by eons LLC.
 * Biology (aka Develop Biology) is a framework for approaching software
 * development from a natural sciences perspective.
 *
 * Copyright (C) 2021 Séon O'Shannon & eons LLC
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <https://www.gnu.org/licenses/>.
 */
 
#pragma once
 
#include "bio/log/Writer.h"
#include "bio/chemical/structure/motif/LinearMotif.h"
#include "Molecule.h"
#include "bio/molecular/common/Types.h"
#include "bio/molecular/common/Class.h"
 
namespace bio {
namespace molecular {
 
class Vesicle;
 
class DNA;
 
class Protein :
    virtual public Molecule,
    public Class< Protein >,
    public chemical::LinearMotif< Protein* >,
    public EnvironmentDependent< Vesicle >
{
public:
 
    BIO_DISAMBIGUATE_ALL_CLASS_METHODS(molecular,
        Protein)
 
     BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS_WITH_CTOR_COMMON(molecular,
        Protein,
        &ProteinPerspective::Instance(),
        filter::Molecular())
 
 
    
    virtual ~Protein();
 
    virtual Code RecruitChaperones(Vesicle* environment);
 
    virtual Code Fold();
 
 
    virtual Code Activate();
 
    virtual Code operator()();
 
    virtual const DNA* GetSource() const;
 
    virtual Code SetSource(const DNA* source);
 
protected:
    const DNA* m_source;
 
private:
    void CtorCommon();
};
 
} //molecular namespace
} //bio namespace