Pathway.h

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/*
 * This file is a part of the Biology project by eons LLC.
 * Biology (aka Develop Biology) is a framework for approaching software
 * development from a natural sciences perspective.
 *
 * Copyright (C) 2021 Séon O'Shannon & eons LLC
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <https://www.gnu.org/licenses/>.
 */
 
#pragma once
 
#include "bio/chemical/common/Class.h"
#include "bio/chemical/reaction/Reaction.h"
#include "bio/chemical/structure/motif/LinearMotif.h"
 
namespace bio {
namespace molecular {
 
class Pathway :
    public chemical::Class< Pathway >,
    public chemical::Reaction,
    public chemical::LinearMotif< chemical::Reaction* >
{
public:
    BIO_DISAMBIGUATE_ALL_CLASS_METHODS(chemical,
        Pathway)
 
     BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS(chemical,
        Pathway,
        &chemical::ReactionPerspective::Instance(),
        filter::Chemical())
 
    
    virtual ~Pathway();
 
    virtual chemical::Products Process(chemical::Reactants* reactants);
 
    virtual bool ReactantsMeetRequirements(const chemical::Reactants* toCheck) const;
};
 
} //molecular namespace
} //bio namespace