Protein.cpp

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/*
 * This file is a part of the Biology project by eons LLC.
 * Biology (aka Develop Biology) is a framework for approaching software
 * development from a natural sciences perspective.
 *
 * Copyright (C) 2021 Séon O'Shannon & eons LLC
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <https://www.gnu.org/licenses/>.
 */
 
#include "bio/molecular/Protein.h"
#include "bio/molecular/common/Filters.h"
#include "bio/molecular/common/Codes.h"
#include "bio/chemical/reaction/Excitation.h"
 
namespace bio {
namespace molecular {
 
void Protein::CtorCommon()
{
    m_source = NULL;
}
 
Protein::~Protein()
{
}
 
Code Protein::Fold()
{
    Code ret = code::Success();
    BIO_EXCITATION_CLASS(Protein, Code) fold(&Protein::Fold);
    chemical::Emission result = ForEach<Protein*>(fold);
    //We don't care about result right now.
    return ret;
}
 
Code Protein::RecruitChaperones(Vesicle* environment)
{
    SetEnvironment(environment);
    BIO_EXCITATION_CLASS(Protein, Code, Vesicle*) recruitChaperones(&Protein::RecruitChaperones, environment);
    chemical::Emission result = ForEach<Protein*>(&recruitChaperones);
    //We don't care about result right now.
    return code::Success();
}
 
 
Code Protein::Activate()
{
    Code ret = code::Success();
    BIO_EXCITATION_CLASS(Protein, Code) activate(&Protein::Activate);
    chemical::Emission result = ForEach<Protein*>(activate);
    //We don't care about result right now.
    return ret;
}
 
Code Protein::operator()()
{
    return Activate();
}
 
Code Protein::SetSource(const DNA* source)
{
    m_source = source;
    return code::Success();
}
 
const DNA* Protein::GetSource() const
{
    return m_source;
}
 
} //molecular namespace
} //bio namespace