#include <FinalMolecule.h>

Inheritance diagram for bio::api::FinalMolecule:

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Collaboration diagram for bio::api::FinalMolecule:

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Public Member Functions
virtual	~FinalMolecule ()

Public Member Functions inherited from bio::Final< bio::molecular::Molecule >
	Final ()

	Final (const Name &name)

	Final (const Id &id)

	~Final ()

	operator Id () const

	operator Pointer< physical::Wave > ()

	operator AS ()

void	operator\| (Pointer< physical::Symmetry > symmetry)

Pointer< physical::Wave >	operator* (Pointer< physical::Wave > signal)

Pointer< physical::Wave >	operator* ()

Pointer< const physical::Wave >	operator* () const

void	operator+ (Pointer< const physical::Wave > other)

void	operator- (Pointer< const physical::Wave > other)

bool	operator== (const Id id) const

bool	operator== (const Name &name) const

bool	operator== (const physical::Identifiable< Id > &other) const

Pointer< physical::Wave >	Clone () const

Pointer< physical::Wave >	AsWave ()

Pointer< const physical::Wave >	AsWave () const

bool	RegisterProperties (const Properties &properties)

Properties	GetProperties () const

Pointer< chemical::Atom >	AsAtom ()

Pointer< const chemical::Atom >	AsAtom () const

Pointer< physical::Wave >	Modulate (Pointer< physical::Wave > signal)

Pointer< physical::Wave >	Demodulate ()

Pointer< const physical::Wave >	Demodulate () const

Code	Attenuate (Pointer< const physical::Wave > other)

Code	Disattenuate (Pointer< const physical::Wave > other)

Pointer< const ::bio::log::Writer >	AsLogWriter () const

void	Log (::bio::LogLevel level, const char *format, va_list args) const

void	Log ()

void	Log (LogLevel level, const char *format,...) const

void	SetEnvironment (Pointer< ENVIRONMENT > environment)

Pointer< ENVIRONMENT >	GetEnvironment ()

const Pointer< ENVIRONMENT >	GetEnvironment () const

T	Add (const T t)

Code	Remove (const T t)

void	Import (Pointer< const chemical::UnorderedMotif< T > > other)

void	Import (Pointer< const chemical::LinearMotif< T > > other)

void	Import (const ::bio::Arrangement< T > &other)

Code	ImportAll (Pointer< const physical::Wave > other)

Index	GetCount () const

Pointer< Container >	GetAll ()

Pointer< const Container >	GetAll () const

bool	Has (T content) const

unsigned int	GetNumMatching (Pointer< const Container > other) const

bool	HasAll (Pointer< const Container > contents) const

void	Clear ()

std::string	GetStringFrom (std::string separator=", ")

Code	Insert (T toAdd, const Position position=BOTTOM, const Id optionalPositionArg=0, const bool transferSubContents=false)

T	GetById (const Id &id)

const T	GetById (const Id &id) const

T	GetByName (const Name &name)

const T	GetByName (const Name &name) const

T	GetOrCreateById (const Id &id)

T	GetOrCreateByName (const Name &name)

chemical::Emission	ForEach (Pointer< chemical::ExcitationBase > excitation)

void	Enable ()

void	Disable ()

bool	IsEnabled () const

T	As ()

const T	As () const

bool	FormBond (T toBond, BondType type=bond_type::Unknown())

bool	BreakBond (T toDisassociate, BondType type=bond_type::Unknown())

Pointer< chemical::Bonds >	GetAllBonds ()

Pointer< const chemical::Bonds >	GetAllBonds () const

Name	GetName () const

Id	GetId () const

void	SetName (const Name &name)

void	SetId (const Id &id)

bool	IsName (const Name &name) const

bool	IsNameInsensitive (const Name &name) const

bool	IsId (const Id &id) const

void	SetPerspective (Pointer< physical::Perspective< Id > > perspective)

void	MakeWave (bool force=false)

Pointer< physical::Perspective< Id > >	GetPerspective () const

Pointer< const physical::Symmetry >	Spin () const

Code	Reify (Pointer< const physical::Symmetry > symmetry)

Public Member Functions inherited from bio::TransparentWrapper< T >
	TransparentWrapper (T t)

	TransparentWrapper (const TransparentWrapper< T > &other)

	~TransparentWrapper ()

	operator T ()

TransparentWrapper< T > &	operator= (const T &t)

TransparentWrapper< T > &	operator= (const TransparentWrapper< T > &other)

bool	operator== (const T &t) const

bool	operator!= (const T &t) const

bool	operator<= (const T &t) const

bool	operator>= (const T &t) const

bool	operator< (const T &t) const

bool	operator> (const T &t) const

bool	operator== (const TransparentWrapper &other) const

bool	operator!= (const TransparentWrapper &other) const

bool	operator<= (const TransparentWrapper &other) const

bool	operator>= (const TransparentWrapper &other) const

bool	operator< (const TransparentWrapper &other) const

bool	operator> (const TransparentWrapper &other) const

T &	operator++ ()

T	operator++ (int)

T &	operator-- ()

T	operator-- (int)

T	operator+= (const T &t)

T	operator-= (const T &t)

T	operator+= (const TransparentWrapper &other)

T	operator-= (const TransparentWrapper &other)

T	operator+ (const T &t) const

T	operator- (const T &t) const

T	operator+ (const TransparentWrapper &other) const

T	operator- (const TransparentWrapper &other) const

T	operator*= (const T &t)

T	operator/= (const T &t)

T	operator*= (const TransparentWrapper &other)

T	operator/= (const TransparentWrapper &other)

T	operator* (const T &t) const

T	operator/ (const T &t) const

T	operator* (const TransparentWrapper &other) const

T	operator/ (const TransparentWrapper &other) const

friend::std::ostream &	operator<< (std::ostream &out, const TransparentWrapper &t)

T *	operator-> ()

const T *	operator-> () const

Additional Inherited Members
Public Types inherited from bio::TransparentWrapper< T >
typedef T	Type

Public Attributes inherited from bio::TransparentWrapper< T >
T	mT

Detailed Description

A FinalMolecule removes all the inheritance machinery from Molecule.
Use this when you want to create your own Molecules but not allow anyone else to override Biology methods when inheriting from them.

Constructor & Destructor Documentation

◆ ~FinalMolecule()

virtual bio::api::FinalMolecule::~FinalMolecule ( )

inlinevirtual

The documentation for this class was generated from the following file:

FinalMolecule.h

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ ~FinalMolecule()