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bio::circulatory::Blood Member List

This is the complete list of members for bio::circulatory::Blood, including all inherited members.

AbstractMotif()bio::chemical::AbstractMotifprotected
AbstractMotif(const AbstractMotif &other)bio::chemical::AbstractMotifprotected
Add(const T t)bio::chemical::UnorderedStructureInterfaceinline
Add(Pointer< T > t)bio::chemical::UnorderedStructureInterfaceinline
AddImplementation(ContentPointer content)bio::chemical::DependentMotif< Solute, Solution >inlineprotectedvirtual
bio::chemical::LinearMotif::AddImplementation(ContentPointer content)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
UnorderedMotif< Pointer< CONTENT_TYPE > >::AddImplementation(const Pointer< CONTENT_TYPE > content)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
AddSharedImplementation(ContentPointer content)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
AddSharedWaveByContentType(Pointer< physical::Wave > wave)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
AddWaveByContentType(Pointer< physical::Wave > wave)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
AllocateContents enum valuebio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >protected
As() constbio::chemical::Atom
Class< Blood >::AsAtom()bio::chemical::Class< Blood >inlinevirtual
Class< Blood >::AsAtom() constbio::chemical::Class< Blood >inlinevirtual
bio::chemical::Solution::Class< Solution >::AsAtom()bio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::AsAtom() constbio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::AsAtom()bio::chemical::Class< Substance >inlinevirtual
bio::chemical::Substance::AsAtom() constbio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::AsAtom()bio::chemical::Class< T >inlinevirtual
bio::DependentMotif< Solute, Solution >::AsAtom() constbio::chemical::Class< T >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::AsAtom()bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
bio::chemical::LinearMotif::AsAtom() constbio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
AsBonded() constbio::chemical::Atom
AsBondedQuantum() constbio::chemical::Atominline
AsLogWriter() constbio::log::Writervirtual
Class< Blood >::AsWave()bio::chemical::Class< Blood >inline
Class< Blood >::AsWave() constbio::chemical::Class< Blood >inline
bio::chemical::Solution::Class< Solution >::AsWave()bio::chemical::Class< Solution >inline
bio::chemical::Solution::AsWave() constbio::chemical::Class< Solution >inline
bio::chemical::Solution::bio::chemical::Substance::AsWave()bio::chemical::Class< Substance >inline
bio::chemical::Substance::AsWave() constbio::chemical::Class< Substance >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::AsWave()bio::chemical::Class< T >inline
bio::DependentMotif< Solute, Solution >::AsWave() constbio::chemical::Class< T >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::AsWave()bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inline
bio::chemical::LinearMotif::AsWave() constbio::chemical::Class< LinearMotif< CONTENT_TYPE > >inline
bio::chemical::LinearMotif::AsWave()bio::chemical::Class< T >inline
UnorderedMotif< Pointer< CONTENT_TYPE > >::AsWave() constbio::chemical::Class< T >inline
Atom()bio::chemical::Atomexplicit
Atom(const Atom &other)bio::chemical::Atomexplicit
Class< Blood >::Attenuate(Pointer< const physical::Wave > other)bio::chemical::Class< Blood >inlinevirtual
bio::chemical::Solution::Class< Solution >::Attenuate(Pointer< const physical::Wave > other)bio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::Attenuate(Pointer< const physical::Wave > other)bio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::Attenuate(Pointer< const physical::Wave > other)bio::chemical::DependentMotif< Solute, Solution >inlinevirtual
BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS(chemical, Blood, filter::Circulatory()) virtual ~Blood()bio::circulatory::Blood
bio::chemical::Solution::BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS(chemical, Solution, filter::Chemical()) virtual Id Dissolve(Pointer< Substance > toDissolvebio::chemical::Solution
BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS_WITH_COMMON_CONSTRUCTOR(chemical, Substance, filter::Chemical()) Substance(const UnorderedMotif< Property > &propertiesbio::chemical::Substance
BondClonePolicy typedefbio::chemical::Atom
BondMutator typedefbio::chemical::Atom
BondVisitor typedefbio::chemical::Atom
BreakBond(T toDisassociate, BondType type=bond_type::Unknown())bio::chemical::Atominline
BreakBondImplementation(AtomicNumber id, BondType type)bio::chemical::Atomvirtual
BreakBondImplementationLocked(AtomicNumber id, BondType type)bio::chemical::Atom
Class< Blood >::Class(Pointer< Blood > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< Blood >inline
Class< Blood >::Class(Pointer< Blood > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< Blood >inline
Class< Blood >::Class(Pointer< Blood > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< Blood >inline
Class< Blood >::Class(const Class &other)bio::chemical::Class< Blood >inline
Class< Blood >::bio::physical::Class::Class(Pointer< T > object, Pointer< Symmetry > symmetry=NULL)bio::physical::Class< T >inline
Class< Blood >::bio::physical::Class::Class(Pointer< T > object, SymmetryFactory symmetryFactory)bio::physical::Class< T >inline
Class< Blood >::bio::physical::Class::Class(const Class &other)bio::physical::Class< T >inline
Class< Blood >::Identifiable< Id >::Class(Pointer< T > object, Pointer< Symmetry > symmetry=NULL)bio::physical::Class< T >inline
Class< Blood >::Identifiable< Id >::Class(Pointer< T > object, SymmetryFactory symmetryFactory)bio::physical::Class< T >inline
Class< Blood >::Identifiable< Id >::Class(const Class &other)bio::physical::Class< T >inline
Class< Blood >::bio::log::Writer::Class(Pointer< Writer > object, Pointer< Symmetry > symmetry=NULL)bio::physical::Class< Writer >inline
Class< Blood >::bio::log::Writer::Class(Pointer< Writer > object, SymmetryFactory symmetryFactory)bio::physical::Class< Writer >inline
Class< Blood >::bio::log::Writer::Class(const Class &other)bio::physical::Class< Writer >inline
Class< Blood >::bio::log::Writer::Class(Pointer< Filterable > object, Pointer< Symmetry > symmetry=NULL)bio::physical::Class< Filterable >inline
Class< Blood >::bio::physical::Filterable::Class(Pointer< Filterable > object, SymmetryFactory symmetryFactory)bio::physical::Class< Filterable >inline
Class< Blood >::bio::physical::Filterable::Class(const Class &other)bio::physical::Class< Filterable >inline
Class< Blood >::bio::chemical::Atom::Class(Pointer< Atom > object, Pointer< Symmetry > symmetry=NULL)bio::physical::Class< Atom >inline
Class< Blood >::bio::chemical::Atom::Class(Pointer< Atom > object, SymmetryFactory symmetryFactory)bio::physical::Class< Atom >inline
Class< Blood >::bio::chemical::Atom::Class(const Class &other)bio::physical::Class< Atom >inline
bio::chemical::Solution::Class< Solution >::Class(Pointer< Solution > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< Solution >inline
bio::chemical::Solution::Class(Pointer< Solution > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< Solution >inline
bio::chemical::Solution::Class(Pointer< Solution > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< Solution >inline
bio::chemical::Solution::Class(const Class &other)bio::chemical::Class< Solution >inline
bio::physical::Class::Class(Pointer< T > object, Pointer< Symmetry > symmetry=NULL)bio::physical::Class< T >inline
bio::physical::Class::Class(Pointer< T > object, SymmetryFactory symmetryFactory)bio::physical::Class< T >inline
bio::physical::Class::Class(const Class &other)bio::physical::Class< T >inline
bio::chemical::Solution::bio::chemical::Substance::Class(Pointer< Substance > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< Substance >inline
bio::chemical::Substance::Class(Pointer< Substance > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< Substance >inline
bio::chemical::Substance::Class(Pointer< Substance > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< Substance >inline
bio::chemical::Substance::Class(const Class &other)bio::chemical::Class< Substance >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::Class(Pointer< T > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< T >inline
bio::DependentMotif< Solute, Solution >::Class(Pointer< T > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< T >inline
bio::DependentMotif< Solute, Solution >::Class(Pointer< T > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< T >inline
bio::DependentMotif< Solute, Solution >::Class(const Class &other)bio::chemical::Class< T >inline
bio::physical::Class::Class(Pointer< T > object, Pointer< Symmetry > symmetry=NULL)bio::physical::Class< T >inline
bio::physical::Class::Class(Pointer< T > object, SymmetryFactory symmetryFactory)bio::physical::Class< T >inline
bio::physical::Class::Class(const Class &other)bio::physical::Class< T >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::Class(Pointer< LinearMotif< CONTENT_TYPE > > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inline
bio::chemical::LinearMotif::Class(Pointer< LinearMotif< CONTENT_TYPE > > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inline
bio::chemical::LinearMotif::Class(Pointer< LinearMotif< CONTENT_TYPE > > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inline
bio::chemical::LinearMotif::Class(const Class &other)bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inline
bio::physical::Class::Class(Pointer< T > object, Pointer< Symmetry > symmetry=NULL)bio::physical::Class< T >inline
bio::physical::Class::Class(Pointer< T > object, SymmetryFactory symmetryFactory)bio::physical::Class< T >inline
bio::physical::Class::Class(const Class &other)bio::physical::Class< T >inline
bio::chemical::LinearMotif::Class(Pointer< T > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< T >inline
UnorderedMotif< Pointer< CONTENT_TYPE > >::Class(Pointer< T > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< T >inline
UnorderedMotif< Pointer< CONTENT_TYPE > >::Class(Pointer< T > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())bio::chemical::Class< T >inline
UnorderedMotif< Pointer< CONTENT_TYPE > >::Class(const Class &other)bio::chemical::Class< T >inline
bio::physical::Class::Class(Pointer< T > object, Pointer< Symmetry > symmetry=NULL)bio::physical::Class< T >inline
bio::physical::Class::Class(Pointer< T > object, SymmetryFactory symmetryFactory)bio::physical::Class< T >inline
bio::physical::Class::Class(const Class &other)bio::physical::Class< T >inline
Clear()bio::chemical::UnorderedStructureInterfaceinline
ClearImplementation()bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
Class< Blood >::Clone() constbio::chemical::Class< Blood >inlinevirtual
bio::chemical::Solution::Class< Solution >::Clone() constbio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::Clone() constbio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::Clone() constbio::chemical::Class< T >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::Clone() constbio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
CloneBondsFrom(const Atom &other, BondClonePolicy policy=&Atom::DefaultBondClonePolicy)bio::chemical::Atom
Contents typedefbio::chemical::LinearMotif< CONTENT_TYPE >protected
ContentsAllocation enum namebio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >protected
Class< Blood >::bio::Class< Blood >::Class< Blood >::Convert(Pointer< Wave > wave)bio::physical::Class< T >inlinestatic
Class< Blood >::Identifiable< Id >::Class< Blood >::Convert(Pointer< Wave > wave)bio::physical::Class< T >inlinestatic
Class< Blood >::bio::log::Writer::Class< Writer >::Convert(Pointer< Wave > wave)bio::physical::Class< Writer >inlinestatic
Class< Blood >::bio::log::Writer::bio::physical::Filterable::Convert(Pointer< Wave > wave)bio::physical::Class< Filterable >inlinestatic
Class< Blood >::bio::chemical::Atom::Convert(Pointer< Wave > wave)bio::physical::Class< Atom >inlinestatic
bio::chemical::Solution::Class< Solution >::bio::Class< Solution >::Class< Solution >::Convert(Pointer< Wave > wave)bio::physical::Class< T >inlinestatic
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::Convert(Pointer< Wave > wave)bio::physical::Class< T >inlinestatic
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::bio::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Convert(Pointer< Wave > wave)bio::physical::Class< T >inlinestatic
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::bio::Convert(Pointer< Wave > wave)bio::physical::Class< T >inlinestatic
Covalent< UnorderedMotif< Property > >::Covalent()bio::Covalent< UnorderedMotif< Property > >inline
Covalent< UnorderedMotif< Property > >::Covalent(const Covalent &other)bio::Covalent< UnorderedMotif< Property > >inline
Covalent< UnorderedMotif< State > >::Covalent()bio::Covalent< UnorderedMotif< State > >inline
Covalent< UnorderedMotif< State > >::Covalent(const Covalent &other)bio::Covalent< UnorderedMotif< State > >inline
CreateImplementation()bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
CreateWithIdImplementation(const Id &id)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
CreateWithNameImplementation(const Name &name)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
DefaultBondClonePolicy(const Bond &bond)bio::chemical::Atomstatic
DeferContents enum valuebio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >protected
Class< Blood >::Demodulate()bio::chemical::Class< Blood >inlinevirtual
Class< Blood >::Demodulate() constbio::chemical::Class< Blood >inlinevirtual
bio::chemical::Solution::Class< Solution >::Demodulate()bio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::Demodulate() constbio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::Demodulate()bio::chemical::Class< Substance >inlinevirtual
bio::chemical::Substance::Demodulate() constbio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::Demodulate()bio::chemical::Class< T >inlinevirtual
bio::DependentMotif< Solute, Solution >::Demodulate() constbio::chemical::Class< T >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::Demodulate()bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
bio::chemical::LinearMotif::Demodulate() constbio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
DependentMotif(EnvironmentPointer environment=NULL)bio::chemical::DependentMotif< Solute, Solution >inlineexplicitprotected
DependentMotif(const typename LinearMotif< Solute >::Contents *contents, EnvironmentPointer environment=NULL)bio::chemical::DependentMotif< Solute, Solution >inlineexplicitprotected
DependentMotif(const DependentMotif< Solute, Solution > &toCopy)bio::chemical::DependentMotif< Solute, Solution >inlineprotected
diffusionEffortbio::chemical::Solution
diffusionTimebio::chemical::Solution
Disable()bio::chemical::Substancevirtual
Class< Blood >::Disattenuate(Pointer< const physical::Wave > other)bio::chemical::Class< Blood >inlinevirtual
bio::chemical::Solution::Class< Solution >::Disattenuate(Pointer< const physical::Wave > other)bio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::Disattenuate(Pointer< const physical::Wave > other)bio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::Disattenuate(Pointer< const physical::Wave > other)bio::chemical::DependentMotif< Solute, Solution >inlinevirtual
Efflux(const Id &soluteId)bio::chemical::Solutionvirtual
Efflux(const Id &soluteId) constbio::chemical::Solutionvirtual
Efflux(const Name &substanceName)bio::chemical::Solutionvirtual
Efflux(const Name &substanceName) constbio::chemical::Solutionvirtual
Class< Blood >::Elementary(const Properties properties)bio::chemical::Elementary< T >inlineprotected
Class< Blood >::Elementary()bio::chemical::Elementary< T >inlineprotected
bio::chemical::Solution::Elementary(const Properties properties)bio::chemical::Elementary< T >inline
bio::chemical::Solution::Elementary()bio::chemical::Elementary< T >inline
bio::chemical::Substance::Elementary(const Properties properties)bio::chemical::Elementary< T >inline
bio::chemical::Substance::Elementary()bio::chemical::Elementary< T >inline
DependentMotif< Solute, Solution >::bio::bio::Elementary(const Properties properties)bio::chemical::Elementary< T >inline
DependentMotif< Solute, Solution >::bio::bio::Elementary()bio::chemical::Elementary< T >inline
bio::chemical::LinearMotif::Elementary(const Properties properties)bio::chemical::Elementary< T >inline
bio::chemical::LinearMotif::Elementary()bio::chemical::Elementary< T >inline
UnorderedMotif< Pointer< CONTENT_TYPE > >::Elementary(const Properties properties)bio::chemical::Elementary< T >inline
UnorderedMotif< Pointer< CONTENT_TYPE > >::Elementary()bio::chemical::Elementary< T >inline
Enable()bio::chemical::Substancevirtual
EnvironmentDependent(EnvironmentPointer environment=NULL)bio::chemical::EnvironmentDependent< T >inlineprotected
EnvironmentType typedefbio::chemical::EnvironmentDependent< T >protected
Filterable()bio::physical::Filterable
Filterable(Filter filter)bio::physical::Filterable
ForEach(Pointer< ExcitationBase > excitation)bio::chemical::LinearStructureInterfaceinline
ForEachBond(BondVisitor visitor, void *context=NULL) constbio::chemical::Atom
ForEachBondMutable(BondMutator mutator, void *context=NULL)bio::chemical::Atom
ForEachImplementation(Pointer< const ExcitationBase > excitation)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
FormBond(T toBond, BondType type=bond_type::Unknown())bio::chemical::Atominline
FormBondImplementation(Pointer< physical::Wave > toBond, AtomicNumber id, BondType type)bio::chemical::Atomvirtual
FormBondImplementation(Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded)bio::chemical::Atom
FormBondImplementationLocked(Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded)bio::chemical::Atom
GetAll()bio::chemical::UnorderedStructureInterfaceinline
GetAll() constbio::chemical::UnorderedStructureInterfaceinline
GetAllBonds()bio::chemical::Atom
GetAllBonds() constbio::chemical::Atom
GetAllImplementation()bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetAllImplementation() constbio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetAllLike(Pointer< const Affinity > affinity) constbio::chemical::LinearStructureInterfaceinline
GetAllLikeImplementation(Pointer< const Affinity > affinity) constbio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetAllSolutes()bio::chemical::Solutionvirtual
GetAllSolutes() constbio::chemical::Solutionvirtual
GetBonded(Valence position)bio::chemical::Atom
GetBonded(Valence position) constbio::chemical::Atom
GetBondId()bio::chemical::Atominlinestatic
GetBondPosition(AtomicNumber bondedId) constbio::chemical::Atom
GetBondPosition(const Name &typeName) constbio::chemical::Atom
GetBondPosition() constbio::chemical::Atominline
GetBondPositionLocked(AtomicNumber bondedId) constbio::chemical::Atom
GetBondType(Valence position) constbio::chemical::Atom
GetBondType() constbio::chemical::Atominline
GetById(const Id &id)bio::chemical::LinearStructureInterfaceinline
GetById(const Id &id) constbio::chemical::LinearStructureInterfaceinline
GetByIdImplementation(const Id &id)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetByIdImplementation(const Id &id) constbio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetByName(const Name &name)bio::chemical::LinearStructureInterfaceinline
GetByName(const Name &name) constbio::chemical::LinearStructureInterfaceinline
GetByNameImplementation(const Name &name)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetByNameImplementation(const Name &name) constbio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetClassProperties()bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedstatic
GetContentTypeId() constbio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetCount() constbio::chemical::UnorderedStructureInterfaceinline
GetCountImplementation() constbio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
GetEnvironment()bio::chemical::EnvironmentDependent< T >inlineprotectedvirtual
GetEnvironment() constbio::chemical::EnvironmentDependent< T >inlineprotectedvirtual
GetFilter() constbio::physical::Filterable
GetId() constbio::physical::Identifiable< Id >inlinevirtual
GetName() constbio::physical::Identifiable< Id >inlinevirtual
GetNumMatching(Pointer< const Container > other) constbio::chemical::UnorderedStructureInterfaceinline
GetNumMatchingImplementation(Pointer< const Container > other) constbio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
GetOrCreateById(Id id)bio::chemical::LinearStructureInterfaceinline
GetOrCreateByIdImplementation(const Id &id)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetOrCreateByName(const Name &name)bio::chemical::LinearStructureInterfaceinline
GetOrCreateByNameImplementation(const Name &name)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
GetPerspective() constbio::physical::Observer< PERSPECTIVE >inlinevirtual
Class< Blood >::GetProperties() constbio::chemical::Class< Blood >inlinevirtual
bio::chemical::Solution::Class< Solution >::GetProperties() constbio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::GetProperties() constbio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::GetProperties() constbio::chemical::Class< T >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::GetProperties() constbio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2)bio::physical::Wavestatic
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties)bio::physical::Wavestatic
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2)bio::physical::Wavestatic
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties)bio::physical::Wavestatic
bio::log::Writer::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
bio::log::Writer::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2)bio::physical::Wavestatic
bio::log::Writer::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties)bio::physical::Wavestatic
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2)bio::physical::Wavestatic
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties)bio::physical::Wavestatic
bio::chemical::Solution::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
bio::chemical::Solution::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2)bio::physical::Wavestatic
bio::chemical::Solution::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties)bio::physical::Wavestatic
DependentMotif< Solute, Solution >::bio::bio::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
DependentMotif< Solute, Solution >::bio::bio::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2)bio::physical::Wavestatic
DependentMotif< Solute, Solution >::bio::bio::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties)bio::physical::Wavestatic
bio::chemical::LinearMotif::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
bio::chemical::LinearMotif::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2)bio::physical::Wavestatic
bio::chemical::LinearMotif::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties)bio::physical::Wavestatic
UnorderedMotif< Pointer< CONTENT_TYPE > >::GetResonanceBetween(ConstWaves waves)bio::physical::Wavestatic
UnorderedMotif< Pointer< CONTENT_TYPE > >::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2)bio::physical::Wavestatic
UnorderedMotif< Pointer< CONTENT_TYPE > >::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties)bio::physical::Wavestatic
GetStringFrom(std::string separator=", ")bio::chemical::UnorderedStructureInterfaceinline
GetStringFromImplementation(std::string separator=", ")bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotected
UnorderedMotif< Pointer< CONTENT_TYPE > >::GetStringFromImplementation(String separator=", ")bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetSymmetry() constbio::physical::Wave
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetSymmetry() constbio::physical::Wave
bio::log::Writer::Class< Writer >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetSymmetry() constbio::physical::Wave
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetSymmetry() constbio::physical::Wave
bio::chemical::Solution::bio::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::GetSymmetry() constbio::physical::Wave
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::GetSymmetry() constbio::physical::Wave
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::bio::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::GetSymmetry() constbio::physical::Wave
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::bio::GetSymmetry() constbio::physical::Wave
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetTypeId() constbio::physical::Waveinline
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetTypeId() constbio::physical::Waveinline
bio::log::Writer::Class< Writer >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetTypeId() constbio::physical::Waveinline
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::GetTypeId() constbio::physical::Waveinline
bio::chemical::Solution::bio::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::GetTypeId() constbio::physical::Waveinline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::GetTypeId() constbio::physical::Waveinline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::bio::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::GetTypeId() constbio::physical::Waveinline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::bio::GetTypeId() constbio::physical::Waveinline
Class< Blood >::bio::GetWaveObject()bio::physical::Class< T >inlinevirtual
Class< Blood >::bio::GetWaveObject() constbio::physical::Class< T >inlinevirtual
Class< Blood >::bio::log::Writer::Class< Writer >::GetWaveObject()bio::physical::Class< Writer >inlinevirtual
Class< Blood >::bio::log::Writer::GetWaveObject() constbio::physical::Class< Writer >inlinevirtual
Class< Blood >::bio::log::Writer::bio::physical::Filterable::GetWaveObject()bio::physical::Class< Filterable >inlinevirtual
Class< Blood >::bio::physical::Filterable::GetWaveObject() constbio::physical::Class< Filterable >inlinevirtual
bio::chemical::Atom::GetWaveObject()bio::physical::Class< Atom >inlinevirtual
bio::chemical::Atom::GetWaveObject() constbio::physical::Class< Atom >inlinevirtual
Has(T content) constbio::chemical::UnorderedStructureInterfaceinline
Has(Pointer< T > content) constbio::chemical::UnorderedStructureInterfaceinline
HasAll(Pointer< const Container > contents) constbio::chemical::UnorderedStructureInterfaceinline
HasAllImplementation(Pointer< const Container > contents) constbio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
HasImplementation(const ContentPointer &content) constbio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
UnorderedMotif< Pointer< CONTENT_TYPE > >::HasImplementation(const Pointer< CONTENT_TYPE > content) constbio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
Identifiable(Pointer< Perspective< Id > > perspective=NULL)bio::physical::Identifiable< Id >inlineexplicit
Identifiable(const Name &name, Pointer< Perspective< Id > > perspective=NULL)bio::physical::Identifiable< Id >inlineexplicit
Identifiable(Identifier id, Pointer< Perspective< Id > > perspective=NULL)bio::physical::Identifiable< Id >inlineexplicit
Identifiable(const Identifiable &other)bio::physical::Identifiable< Id >inline
Identifier typedefbio::physical::Identifiable< Id >
Ids typedefbio::physical::Identifiable< Id >
Import(Pointer< const UnorderedMotif< T > > other)bio::chemical::UnorderedStructureInterfaceinline
Import(Pointer< const LinearMotif< T > > other)bio::chemical::UnorderedStructureInterfaceinline
Import(const ::bio::Arrangement< T > &other)bio::chemical::UnorderedStructureInterfaceinline
ImportAll(Pointer< const physical::Wave > other)bio::chemical::UnorderedStructureInterfaceinline
ImportAllCollectVisitor(const chemical::Bond &bond, void *ctx)bio::chemical::UnorderedStructureInterfaceinlinestatic
ImportImplementation(Pointer< const LinearMotif< CONTENT_TYPE > > other)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
ImportImplementation(const void *other)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
UnorderedMotif< Pointer< CONTENT_TYPE > >::ImportImplementation(Pointer< const UnorderedMotif< Pointer< CONTENT_TYPE > > > other)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
IndexBond(AtomicNumber bondedId, Valence position)bio::chemical::Atomprotected
Influx(const Solute &toInflux)bio::chemical::Solutionvirtual
Initialize(ByteStreams &args)bio::VirtualBaseprotected
Initialize(ByteStream arg1)bio::VirtualBaseprotected
Initialize(ByteStream arg1, ByteStream arg2)bio::VirtualBaseprotected
Initialize(ByteStream arg1, ByteStream arg2, ByteStream arg3)bio::VirtualBaseprotected
Class< Blood >::Identifiable< Id >::InitializeImplementation(ByteStreams &args)bio::physical::Identifiable< Id >inlineprotectedvirtual
bio::log::Writer::InitializeImplementation(ByteStreams &args)bio::physical::Filterablevirtual
Insert(typename LinearStructureRequest< T >::PointerType toAdd, const Position position=BOTTOM, const Id optionalPositionArg=0, const bool transferSubContents=false)bio::chemical::LinearStructureInterfaceinline
InsertImplementation(ContentPointer toAdd, const Position position=BOTTOM, const Id optionalPositionArg=0, const bool transferSubContents=false)bio::chemical::DependentMotif< Solute, Solution >inlineprotectedvirtual
bio::chemical::LinearMotif::InsertImplementation(ContentPointer toAdd, const Position position=BOTTOM, const Id optionalPositionArg=0, const bool transferSubContents=false)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
Class< Blood >::IsEnabled(LogLevel level) constbio::log::Writer
bio::chemical::Solution::bio::chemical::Substance::IsEnabled() constbio::chemical::Substancevirtual
IsId(Identifier id) constbio::physical::Identifiable< Id >inlinevirtual
IsName(const Name &name) constbio::physical::Identifiable< Id >inlinevirtual
IsNameInsensitive(const Name &name) constbio::physical::Identifiable< Id >inlinevirtual
LinearMotif()bio::chemical::LinearMotif< CONTENT_TYPE >inlineexplicitprotected
LinearMotif(const Contents *contents)bio::chemical::LinearMotif< CONTENT_TYPE >inlineexplicitprotected
LinearMotif(const LinearMotif< CONTENT_TYPE > &toCopy)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotected
LinearStructureInterface()bio::chemical::LinearStructureInterfaceinline
LockMutexShared() constbio::ThreadSafe
LockThread() constbio::ThreadSafe
Class< Blood >::Log(LogLevel level, const char *format, va_list args) constbio::log::Writervirtual
Class< Blood >::Log(Pointer< const Writer > writer, LogLevel level, const char *format,...)bio::log::Writerstatic
bio::chemical::Solution::bio::chemical::Substance::bio::chemical::Structure::Log(const LogLevel &level=log_level::Info(), const Filter &filter=FilterPerspective::InvalidId())bio::chemical::UnorderedStructureInterfaceinline
LogImplementation(const LogLevel &level=log_level::Info(), const Filter &filter=FilterPerspective::InvalidId())bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
mBackflowPreventerbio::chemical::Atomprotected
mBondIndexbio::chemical::Atomprotected
mBondsbio::chemical::Atomprotected
mContentIdbio::chemical::LinearMotif< CONTENT_TYPE >mutableprotected
mContentsbio::chemical::AbstractMotifmutableprotected
mEnvironmentbio::chemical::EnvironmentDependent< T >protected
mFilterbio::physical::Filterableprotected
mHasBeenInitializedbio::VirtualBaseprotected
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mHasSignalbio::physical::Waveprotected
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mHasSignalbio::physical::Waveprotected
bio::log::Writer::Class< Writer >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mHasSignalbio::physical::Waveprotected
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mHasSignalbio::physical::Waveprotected
bio::chemical::Solution::bio::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::mHasSignalbio::physical::Waveprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::mHasSignalbio::physical::Waveprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::bio::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::mHasSignalbio::physical::Waveprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::bio::mHasSignalbio::physical::Waveprotected
Class< Blood >::bio::Class< Blood >::Class< Blood >::mObjectbio::physical::Class< T >mutableprotected
Class< Blood >::Identifiable< Id >::Class< Blood >::mObjectbio::physical::Class< T >mutableprotected
Class< Blood >::bio::log::Writer::Class< Writer >::mObjectbio::physical::Class< Writer >mutableprotected
Class< Blood >::bio::log::Writer::bio::physical::Filterable::mObjectbio::physical::Class< Filterable >mutableprotected
Class< Blood >::bio::chemical::Atom::mObjectbio::physical::Class< Atom >mutableprotected
bio::chemical::Solution::Class< Solution >::bio::Class< Solution >::Class< Solution >::mObjectbio::physical::Class< T >mutableprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::mObjectbio::physical::Class< T >mutableprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::bio::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::mObjectbio::physical::Class< T >mutableprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::bio::mObjectbio::physical::Class< T >mutableprotected
Class< Blood >::Modulate(Pointer< ::bio::physical::Wave > signal)bio::chemical::Class< Blood >inlinevirtual
Class< Blood >::bio::physical::Class::Modulate(Pointer< Wave > signal)bio::physical::Wavevirtual
bio::chemical::Solution::Class< Solution >::Modulate(Pointer< ::bio::physical::Wave > signal)bio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::Modulate(Pointer< ::bio::physical::Wave > signal)bio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::Modulate(Pointer< ::bio::physical::Wave > signal)bio::chemical::Class< T >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::Modulate(Pointer< ::bio::physical::Wave > signal)bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mSymmetrybio::physical::Wavemutableprotected
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mSymmetrybio::physical::Wavemutableprotected
bio::log::Writer::Class< Writer >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mSymmetrybio::physical::Wavemutableprotected
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mSymmetrybio::physical::Wavemutableprotected
bio::chemical::Solution::bio::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::mSymmetrybio::physical::Wavemutableprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::mSymmetrybio::physical::Wavemutableprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::bio::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::mSymmetrybio::physical::Wavemutableprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::bio::mSymmetrybio::physical::Wavemutableprotected
Covalent< UnorderedMotif< Property > >::mTbio::Covalent< UnorderedMotif< Property > >protected
Covalent< UnorderedMotif< State > >::mTbio::Covalent< UnorderedMotif< State > >protected
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mTypeIdbio::physical::Waveprotected
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mTypeIdbio::physical::Waveprotected
bio::log::Writer::Class< Writer >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mTypeIdbio::physical::Waveprotected
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::mTypeIdbio::physical::Waveprotected
bio::chemical::Solution::bio::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::mTypeIdbio::physical::Waveprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::mTypeIdbio::physical::Waveprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::bio::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::mTypeIdbio::physical::Waveprotected
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::bio::mTypeIdbio::physical::Waveprotected
NewContents(Index expectedSize)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedstatic
NewContents(const Contents &contents)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedstatic
NewContents(Pointer< const Container > contents)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedstatic
Covalent< UnorderedMotif< Property > >::Object()bio::Covalent< UnorderedMotif< Property > >inline
Covalent< UnorderedMotif< Property > >::Object() constbio::Covalent< UnorderedMotif< Property > >inline
Covalent< UnorderedMotif< State > >::Object()bio::Covalent< UnorderedMotif< State > >inline
Covalent< UnorderedMotif< State > >::Object() constbio::Covalent< UnorderedMotif< State > >inline
Observer(Pointer< Perspective > perspective=NULL)bio::physical::Observer< PERSPECTIVE >inlineexplicit
Observer(const Observer &other)bio::physical::Observer< PERSPECTIVE >inline
operator Atom &()bio::physical::Class< Atom >inlinevirtual
operator const Atom &() constbio::physical::Class< Atom >inlinevirtual
operator const Filterable &() constbio::physical::Class< Filterable >inlinevirtual
operator const T &() constbio::physical::Class< T >inlinevirtual
operator const Writer &() constbio::physical::Class< Writer >inlinevirtual
operator Filterable &()bio::physical::Class< Filterable >inlinevirtual
operator Id() constbio::physical::Identifiable< Id >inlinevirtual
Class< Blood >::operator Pointer< ::bio::physical::Wave >()bio::chemical::Class< Blood >inline
bio::chemical::Solution::Class< Solution >::operator Pointer< ::bio::physical::Wave >()bio::chemical::Class< Solution >inline
bio::chemical::Solution::bio::chemical::Substance::operator Pointer< ::bio::physical::Wave >()bio::chemical::Class< Substance >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::operator Pointer< ::bio::physical::Wave >()bio::chemical::Class< T >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::operator Pointer< ::bio::physical::Wave >()bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::operator Pointer< ::bio::physical::Wave >()bio::chemical::Class< T >inline
Class< Blood >::bio::operator Pointer< Wave >()bio::physical::Class< T >inlinevirtual
Class< Blood >::bio::log::Writer::Class< Writer >::operator Pointer< Wave >()bio::physical::Class< Writer >inlinevirtual
Class< Blood >::bio::log::Writer::bio::physical::Filterable::operator Pointer< Wave >()bio::physical::Class< Filterable >inlinevirtual
bio::chemical::Atom::operator Pointer< Wave >()bio::physical::Class< Atom >inlinevirtual
operator T() constbio::chemical::Atom
operator T&()bio::physical::Class< T >inlinevirtual
operator Writer &()bio::physical::Class< Writer >inlinevirtual
operator*(Pointer< Wave > signal)bio::physical::Wavevirtual
operator*()bio::physical::Wavevirtual
operator*() constbio::physical::Wavevirtual
operator+(Pointer< const Wave > other)bio::physical::Wavevirtual
operator-(Pointer< const Wave > other)bio::physical::Wavevirtual
operator<<(std::ostream &out, const Identifiable< Id > &t)bio::physical::Identifiable< Id >inlineprotected
Class< Blood >::bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::operator=(const Wave &other)bio::physical::Wave
Class< Blood >::Identifiable< Id >::Class< Blood >::operator=(const Wave &other)bio::physical::Wave
Class< Blood >::bio::log::Writer::Class< Writer >::Class< Blood >::operator=(const Wave &other)bio::physical::Wave
Class< Blood >::bio::chemical::Atom::Class< Atom >::Class< Blood >::operator=(const Wave &other)bio::physical::Wave
Class< Blood >::bio::chemical::Atom::bio::ThreadSafe::operator=(const ThreadSafe &toCopy)bio::ThreadSafe
bio::chemical::Solution::Class< Solution >::bio::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::operator=(const Wave &other)bio::physical::Wave
bio::chemical::Solution::bio::chemical::Substance::Covalent< UnorderedMotif< Property > >::operator=(const Covalent &other)bio::Covalent< UnorderedMotif< Property > >inline
bio::chemical::Solution::bio::chemical::Substance::Covalent< UnorderedMotif< State > >::operator=(const Covalent &other)bio::Covalent< UnorderedMotif< State > >inline
bio::DependentMotif< Solute, Solution >::bio::operator=(const Wave &other)bio::physical::Wave
bio::DependentMotif< Solute, Solution >::operator=(const Wave &other)bio::physical::Wave
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::operator=(const UnorderedMotif< Pointer< CONTENT_TYPE > > &toCopy)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inline
bio::chemical::Class::operator=(const Wave &other)bio::physical::Wave
bio::chemical::AbstractMotif::operator=(const AbstractMotif &other)bio::chemical::AbstractMotif
operator==(const Identifier id) constbio::physical::Identifiable< Id >inlinevirtual
operator==(const Name &name) constbio::physical::Identifiable< Id >inlinevirtual
operator==(const Identifiable< Id > &other) constbio::physical::Identifiable< Id >inlinevirtual
operator|(Pointer< Symmetry > symmetry)bio::physical::Wavevirtual
Perspective typedefbio::physical::Observer< PERSPECTIVE >
Class< Blood >::RegisterProperties(const Properties &properties)bio::chemical::Class< Blood >inlinevirtual
bio::chemical::Solution::Class< Solution >::RegisterProperties(const Properties &properties)bio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::RegisterProperties(const Properties &properties)bio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::RegisterProperties(const Properties &properties)bio::chemical::Class< T >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::RegisterProperties(const Properties &properties)bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
Class< Blood >::RegisterType()bio::chemical::Elementary< T >inlineprotected
bio::chemical::Solution::Class< Solution >::RegisterType()bio::chemical::Elementary< T >inline
bio::chemical::Solution::bio::chemical::Substance::RegisterType()bio::chemical::Elementary< T >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::RegisterType()bio::chemical::Elementary< T >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::RegisterType()bio::chemical::Elementary< T >inline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::RegisterType()bio::chemical::Elementary< T >inline
Class< Blood >::bio::Reify(Pointer< const Symmetry > symmetry)bio::physical::Wavevirtual
Class< Blood >::bio::log::Writer::bio::physical::Filterable::Reify(Pointer< const Symmetry > symmetry)bio::physical::Filterablevirtual
bio::chemical::Atom::Reify(Pointer< const physical::Symmetry > symmetry)bio::chemical::Atomvirtual
ReleaseContentOwnership()bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotected
ReleaseImplementation(const ContentPointer content)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotected
Remove(const T t)bio::chemical::UnorderedStructureInterfaceinline
Remove(Pointer< T > t)bio::chemical::UnorderedStructureInterfaceinline
RemoveById(const Id &id)bio::chemical::LinearStructureInterfaceinline
RemoveByIdImplementation(const Id &id)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
RemoveByName(const Name &name)bio::chemical::LinearStructureInterfaceinline
RemoveByNameImplementation(const Name &name)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
RemoveImplementation(const ContentPointer content)bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
UnorderedMotif< Pointer< CONTENT_TYPE > >::RemoveImplementation(const Pointer< CONTENT_TYPE > content)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
ResolveBondedForReadById(AtomicNumber bondId) constbio::chemical::Atom
ResolveBondedForWriteById(AtomicNumber bondId)bio::chemical::Atom
ResolveLinearMotif()bio::chemical::LinearStructureInterfaceinlineprotected
ResolveLinearMotif() constbio::chemical::LinearStructureInterfaceinlineprotected
Separate(const Id &id)bio::chemical::Solutionvirtual
SetEnvironment(EnvironmentPointer environment)bio::chemical::DependentMotif< Solute, Solution >inlineprotectedvirtual
bio::chemical::EnvironmentDependent::SetEnvironment(EnvironmentPointer environment)bio::chemical::EnvironmentDependent< T >inlineprotectedvirtual
SetFilter(Filter filter)bio::physical::Filterablevirtual
SetId(Identifier id)bio::physical::Identifiable< Id >inlinevirtual
SetName(const Name &name)bio::physical::Identifiable< Id >inlinevirtual
SetPerspective(Pointer< Perspective< Id > > perspective)bio::physical::Identifiable< Id >inlinevirtual
bio::physical::Observer::SetPerspective(Pointer< Perspective > perspective)bio::physical::Observer< PERSPECTIVE >inlinevirtual
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::SetTypeId(uint16_t typeId)bio::physical::Waveinline
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::SetTypeId(uint16_t typeId)bio::physical::Waveinline
bio::log::Writer::Class< Writer >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::SetTypeId(uint16_t typeId)bio::physical::Waveinline
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::SetTypeId(uint16_t typeId)bio::physical::Waveinline
bio::chemical::Solution::bio::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::Class< Solution >::SetTypeId(uint16_t typeId)bio::physical::Waveinline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::SetTypeId(uint16_t typeId)bio::physical::Waveinline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::bio::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::Class< LinearMotif< CONTENT_TYPE > >::SetTypeId(uint16_t typeId)bio::physical::Waveinline
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::UnorderedMotif< Pointer< CONTENT_TYPE > >::bio::SetTypeId(uint16_t typeId)bio::physical::Waveinline
ShouldLog(Pointer< const Writer > writer, LogLevel level)bio::log::Writerstatic
Class< Blood >::bio::Spin() constbio::physical::Wavevirtual
Class< Blood >::bio::log::Writer::bio::physical::Filterable::Spin() constbio::physical::Filterablevirtual
bio::chemical::Atom::Spin() constbio::chemical::Atomvirtual
statesbio::chemical::Substance
Structure()bio::chemical::Structure
Class< Blood >::Superpose(const ::bio::physical::ConstWaves &displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< Blood >inlinevirtual
Class< Blood >::Superpose(Pointer< const ::bio::physical::Wave > displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< Blood >inlinevirtual
Class< Blood >::bio::physical::Class::Superpose(Pointer< const Wave > displacement, Pointer< Interference > pattern)bio::physical::Wavevirtual
Class< Blood >::bio::physical::Class::Superpose(const ConstWaves &displacement, Pointer< Interference > pattern)bio::physical::Wavevirtual
bio::chemical::Solution::Class< Solution >::Superpose(const ::bio::physical::ConstWaves &displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::Superpose(Pointer< const ::bio::physical::Wave > displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::Superpose(const ::bio::physical::ConstWaves &displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< Substance >inlinevirtual
bio::chemical::Substance::Superpose(Pointer< const ::bio::physical::Wave > displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::Superpose(const ::bio::physical::ConstWaves &displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< T >inlinevirtual
bio::DependentMotif< Solute, Solution >::Superpose(Pointer< const ::bio::physical::Wave > displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< T >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::Superpose(const ::bio::physical::ConstWaves &displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
bio::chemical::LinearMotif::Superpose(Pointer< const ::bio::physical::Wave > displacement, Pointer< ::bio::physical::Interference > pattern)bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
ThreadSafe()bio::ThreadSafe
ThreadSafe(const ThreadSafe &toCopy)bio::ThreadSafe
UnindexBond(AtomicNumber bondedId)bio::chemical::Atomprotected
UnlockMutexShared() constbio::ThreadSafe
UnlockThread() constbio::ThreadSafe
UnorderedMotif()bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotected
UnorderedMotif(ContentsAllocation allocation)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineexplicitprotected
UnorderedMotif(Pointer< const Contents > contents)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotected
UnorderedMotif(Pointer< const UnorderedMotif< Pointer< CONTENT_TYPE > > > toCopy)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotected
UnorderedMotif(const UnorderedMotif< Pointer< CONTENT_TYPE > > &toCopy)bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotected
UnorderedStructureInterface()bio::chemical::UnorderedStructureInterfaceinline
VirtualBase()bio::VirtualBaseprotected
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Wave(Pointer< Symmetry > symmetry=NULL)bio::physical::Wave
bio::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Wave(const Wave &other)bio::physical::Wave
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Wave(Pointer< Symmetry > symmetry=NULL)bio::physical::Wave
Identifiable< Id >::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Wave(const Wave &other)bio::physical::Wave
bio::log::Writer::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Wave(Pointer< Symmetry > symmetry=NULL)bio::physical::Wave
bio::log::Writer::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Wave(const Wave &other)bio::physical::Wave
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Wave(Pointer< Symmetry > symmetry=NULL)bio::physical::Wave
bio::chemical::Atom::Class< Blood >::Class< Blood >::Class< Blood >::Class< Blood >::Wave(const Wave &other)bio::physical::Wave
bio::chemical::Solution::Wave(Pointer< Symmetry > symmetry=NULL)bio::physical::Wave
bio::chemical::Solution::Wave(const Wave &other)bio::physical::Wave
DependentMotif< Solute, Solution >::bio::bio::Wave(Pointer< Symmetry > symmetry=NULL)bio::physical::Wave
DependentMotif< Solute, Solution >::bio::bio::Wave(const Wave &other)bio::physical::Wave
bio::chemical::LinearMotif::Wave(Pointer< Symmetry > symmetry=NULL)bio::physical::Wave
bio::chemical::LinearMotif::Wave(const Wave &other)bio::physical::Wave
UnorderedMotif< Pointer< CONTENT_TYPE > >::Wave(Pointer< Symmetry > symmetry=NULL)bio::physical::Wave
UnorderedMotif< Pointer< CONTENT_TYPE > >::Wave(const Wave &other)bio::physical::Wave
Writer()bio::log::Writer
Writer(Filter logFilter)bio::log::Writer
~AbstractMotif()bio::chemical::AbstractMotifprotectedvirtual
~Atom()bio::chemical::Atomvirtual
Class< Blood >::~Class()bio::chemical::Class< Blood >inlinevirtual
bio::chemical::Solution::Class< Solution >::~Class()bio::chemical::Class< Solution >inlinevirtual
bio::chemical::Solution::bio::chemical::Substance::~Class()bio::chemical::Class< Substance >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::~Class()bio::chemical::Class< T >inlinevirtual
bio::chemical::Solution::DependentMotif< Solute, Solution >::bio::chemical::LinearMotif::Class< LinearMotif< CONTENT_TYPE > >::~Class()bio::chemical::Class< LinearMotif< CONTENT_TYPE > >inlinevirtual
Covalent< UnorderedMotif< Property > >::~Covalent()bio::Covalent< UnorderedMotif< Property > >inlinevirtual
Covalent< UnorderedMotif< State > >::~Covalent()bio::Covalent< UnorderedMotif< State > >inlinevirtual
~DependentMotif()bio::chemical::DependentMotif< Solute, Solution >inlineprotectedvirtual
~Elementary()bio::chemical::Elementary< T >inlineprotectedvirtual
~EnvironmentDependent()bio::chemical::EnvironmentDependent< T >inlineprotectedvirtual
~Filterable()bio::physical::Filterablevirtual
~Identifiable()bio::physical::Identifiable< Id >inlinevirtual
~LinearMotif()bio::chemical::LinearMotif< CONTENT_TYPE >inlineprotectedvirtual
~LinearStructureInterface()bio::chemical::LinearStructureInterfaceinlinevirtual
~Observer()bio::physical::Observer< PERSPECTIVE >inlinevirtual
~Structure()bio::chemical::Structurevirtual
~Substance()bio::chemical::Substancevirtual
~ThreadSafe()bio::ThreadSafe
~UnorderedMotif()bio::chemical::UnorderedMotif< Pointer< CONTENT_TYPE > >inlineprotectedvirtual
~UnorderedStructureInterface()bio::chemical::UnorderedStructureInterfaceinlinevirtual
~VirtualBase()bio::VirtualBaseprotectedvirtual
~Wave()bio::physical::Wavevirtual
~Writer()bio::log::Writervirtual