bio::genetic::TranslocatorImplementation Class Reference

#include <Translocator.h>

Inheritance diagram for bio::genetic::TranslocatorImplementation:

Collaboration diagram for bio::genetic::TranslocatorImplementation:

Public Member Functions
	TranslocatorImplementation ()
virtual	~TranslocatorImplementation ()
bool	AssociateSignalPeptidase (Location location, Epitope epitope, Pointer< chemical::ExcitationBase > peptidase)
bool	DisassociateSignalPeptidase (Location location, Epitope epitope)
Pointer< chemical::ExcitationBase >	GetPeptidase (Location location, Epitope epitope)
Pointer< chemical::ExcitationBase >	GetPeptidase (Location location, const Name &epitope)
Public Member Functions inherited from bio::physical::Perspective< Location >
	Perspective ()
virtual	~Perspective ()
SmartIterator	Find (const Location &id)
SmartIterator	Find (const Location &id) const
virtual Location	GetIdFromName (const Name &name)
virtual Name	GetNameFromId (const Location &id) const
virtual Location	GetUniqueIdFor (const Name &name)
virtual Location	GetIdWithoutCreation (const Name &name) const
virtual Location	GetNumUsedIds () const
Public Member Functions inherited from bio::ThreadSafe
	ThreadSafe ()
	ThreadSafe (const ThreadSafe &toCopy)
ThreadSafe &	operator= (const ThreadSafe &toCopy)
	~ThreadSafe ()
void	LockThread () const
void	UnlockThread () const
void	LockMutexShared () const
void	UnlockMutexShared () const

Protected Member Functions
virtual Pointer< physical::Brane< Location > >	CreateBrane (Location id, const Name &name)
Protected Member Functions inherited from bio::physical::Perspective< Location >
void	RegisterBrane (Pointer< Brane< Location > > brane)
T	GetBraneAs (Location id)
const T	GetBraneAs (Location id) const

Additional Inherited Members
Static Public Member Functions inherited from bio::physical::Perspective< Location >
static Location	InvalidId ()
static Name	InvalidName ()
Static Protected Member Functions inherited from bio::physical::Perspective< Location >
::std::string	IndexKeyFor (const Name &name)
Protected Attributes inherited from bio::physical::Perspective< Location >
Pointer< Container >	mBranes
Location	mNextId
mutable ::std::map< Location, Index >	mByIdIndex

Detailed Description

The Translocator is responsible for moving Genes to their appropriate Location within a genetic::Expressor (e.g. a Cell).

Constructor & Destructor Documentation

TranslocatorImplementation()

bio::genetic::TranslocatorImplementation::TranslocatorImplementation

(

)

~TranslocatorImplementation()

bio::genetic::TranslocatorImplementation::~TranslocatorImplementation ( )

virtual

Member Function Documentation

AssociateSignalPeptidase()

bool bio::genetic::TranslocatorImplementation::AssociateSignalPeptidase	(	Location	location,
		Epitope	epitope,
		Pointer< chemical::ExcitationBase >	peptidase
	)

Store an Excitation as a Peptidase with the given epitope at the given location.
If an Excitation was previously Associated, it must be Disassociated before it can be changed

Parameters

location
epitope
peptidase

Returns

true if the association completed successfully else false

CreateBrane()

Pointer< physical::Brane< Location > > bio::genetic::TranslocatorImplementation::CreateBrane ( Location  id, const Name &  name  )

protectedvirtual

Create a SignalPeptide instead of any other kind of Brane.

Parameters

id
name

Returns

a new SignalPeptide.

Reimplemented from bio::physical::Perspective< Location >.

DisassociateSignalPeptidase()

bool bio::genetic::TranslocatorImplementation::DisassociateSignalPeptidase	(	Location	location,
		Epitope	epitope
	)

Removes the Associated Excitation for the given epitope at the given location.

Parameters

location
epitope

Returns

true if the association was removed else false.

GetPeptidase() [1/2]

Pointer< chemical::ExcitationBase > bio::genetic::TranslocatorImplementation::GetPeptidase	(	Location	location,
		const Name &	epitope
	)

Get a previously Associated Excitation for the given epitope at the given location.
Make sure to Delete the returned Excitation!

Parameters

location
epitope

Returns

a new chemical::Excitation* or NULL

GetPeptidase() [2/2]

Pointer< chemical::ExcitationBase > bio::genetic::TranslocatorImplementation::GetPeptidase	(	Location	location,
		Epitope	epitope
	)

Get a previously Associated Excitation for the given epitope at the given location.
Make sure to Delete the returned Excitation!

Parameters

location
epitope

Returns

a new chemical::Excitation* or NULL

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The documentation for this class was generated from the following files:

• Translocator.h
• Translocator.cpp