| As() const | bio::chemical::Atom | |
| AsAtom() | bio::chemical::Class< Solute > | inlinevirtual |
| AsAtom() const | bio::chemical::Class< Solute > | inlinevirtual |
| AsBonded() const | bio::chemical::Atom | |
| AsBondedQuantum() const | bio::chemical::Atom | inline |
| AsLogWriter() const | bio::log::Writer | virtual |
| Class< Solute >::AsWave() | bio::chemical::Class< Solute > | inline |
| Class< Solute >::AsWave() const | bio::chemical::Class< Solute > | inline |
| bio::physical::Periodic::AsWave() | bio::physical::Class< Periodic > | inline |
| bio::physical::Periodic::AsWave() const | bio::physical::Class< Periodic > | inline |
| Atom() | bio::chemical::Atom | explicit |
| Atom(const Atom &other) | bio::chemical::Atom | explicit |
| Attenuate(Pointer< const physical::Wave > other) | bio::chemical::Class< Solute > | inlinevirtual |
| BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS_WITH_COMMON_CONSTRUCTOR(chemical, Solute, filter::Chemical()) Solute(const Solute &other) | bio::chemical::Solute | |
| BondClonePolicy typedef | bio::chemical::Atom | |
| BondMutator typedef | bio::chemical::Atom | |
| BondVisitor typedef | bio::chemical::Atom | |
| BreakBond(T toDisassociate, BondType type=bond_type::Unknown()) | bio::chemical::Atom | inline |
| BreakBondImplementation(AtomicNumber id, BondType type) | bio::chemical::Atom | virtual |
| BreakBondImplementationLocked(AtomicNumber id, BondType type) | bio::chemical::Atom | |
| CheckIn() | bio::physical::Periodic | virtual |
| Class< Solute >::Class(Pointer< Solute > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object()) | bio::chemical::Class< Solute > | inline |
| Class< Solute >::Class(Pointer< Solute > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object()) | bio::chemical::Class< Solute > | inline |
| Class< Solute >::Class(Pointer< Solute > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object()) | bio::chemical::Class< Solute > | inline |
| Class< Solute >::Class(const Class &other) | bio::chemical::Class< Solute > | inline |
| Class< Solute >::bio::physical::Class::Class(Pointer< T > object, Pointer< Symmetry > symmetry=NULL) | bio::physical::Class< T > | inline |
| Class< Solute >::bio::physical::Class::Class(Pointer< T > object, SymmetryFactory symmetryFactory) | bio::physical::Class< T > | inline |
| Class< Solute >::bio::physical::Class::Class(const Class &other) | bio::physical::Class< T > | inline |
| Class< Solute >::Identifiable< Id >::Class(Pointer< T > object, Pointer< Symmetry > symmetry=NULL) | bio::physical::Class< T > | inline |
| Class< Solute >::Identifiable< Id >::Class(Pointer< T > object, SymmetryFactory symmetryFactory) | bio::physical::Class< T > | inline |
| Class< Solute >::Identifiable< Id >::Class(const Class &other) | bio::physical::Class< T > | inline |
| Class< Solute >::bio::log::Writer::Class(Pointer< Writer > object, Pointer< Symmetry > symmetry=NULL) | bio::physical::Class< Writer > | inline |
| Class< Solute >::bio::log::Writer::Class(Pointer< Writer > object, SymmetryFactory symmetryFactory) | bio::physical::Class< Writer > | inline |
| Class< Solute >::bio::log::Writer::Class(const Class &other) | bio::physical::Class< Writer > | inline |
| Class< Solute >::bio::log::Writer::Class(Pointer< Filterable > object, Pointer< Symmetry > symmetry=NULL) | bio::physical::Class< Filterable > | inline |
| Class< Solute >::bio::physical::Filterable::Class(Pointer< Filterable > object, SymmetryFactory symmetryFactory) | bio::physical::Class< Filterable > | inline |
| Class< Solute >::bio::physical::Filterable::Class(const Class &other) | bio::physical::Class< Filterable > | inline |
| Class< Solute >::bio::chemical::Atom::Class(Pointer< Atom > object, Pointer< Symmetry > symmetry=NULL) | bio::physical::Class< Atom > | inline |
| Class< Solute >::bio::chemical::Atom::Class(Pointer< Atom > object, SymmetryFactory symmetryFactory) | bio::physical::Class< Atom > | inline |
| Class< Solute >::bio::chemical::Atom::Class(const Class &other) | bio::physical::Class< Atom > | inline |
| bio::physical::Periodic::Class(Pointer< Periodic > object, Pointer< Symmetry > symmetry=NULL) | bio::physical::Class< Periodic > | inline |
| bio::physical::Periodic::Class(Pointer< Periodic > object, SymmetryFactory symmetryFactory) | bio::physical::Class< Periodic > | inline |
| bio::physical::Periodic::Class(const Class &other) | bio::physical::Class< Periodic > | inline |
| Class< Solute >::Clone() const | bio::chemical::Class< Solute > | inlinevirtual |
| bio::physical::Periodic::Clone() const | bio::physical::Class< Periodic > | inlinevirtual |
| CloneBondsFrom(const Atom &other, BondClonePolicy policy=&Atom::DefaultBondClonePolicy) | bio::chemical::Atom | |
| Class< Solute >::bio::Convert(Pointer< Wave > wave) | bio::physical::Class< T > | inlinestatic |
| Class< Solute >::Identifiable< Id >::Convert(Pointer< Wave > wave) | bio::physical::Class< T > | inlinestatic |
| Class< Solute >::bio::log::Writer::Class< Writer >::Convert(Pointer< Wave > wave) | bio::physical::Class< Writer > | inlinestatic |
| Class< Solute >::bio::log::Writer::bio::physical::Filterable::Convert(Pointer< Wave > wave) | bio::physical::Class< Filterable > | inlinestatic |
| Class< Solute >::bio::chemical::Atom::Convert(Pointer< Wave > wave) | bio::physical::Class< Atom > | inlinestatic |
| bio::physical::Periodic::Convert(Pointer< Wave > wave) | bio::physical::Class< Periodic > | inlinestatic |
| Crest() | bio::chemical::Solute | virtual |
| DefaultBondClonePolicy(const Bond &bond) | bio::chemical::Atom | static |
| Demodulate() | bio::chemical::Class< Solute > | inlinevirtual |
| Demodulate() const | bio::chemical::Class< Solute > | inlinevirtual |
| Destructor() | bio::chemical::Solute | protectedvirtual |
| Diffuse() const | bio::chemical::Solute | virtual |
| Disattenuate(Pointer< const physical::Wave > other) | bio::chemical::Class< Solute > | inlinevirtual |
| Elementary(const Properties properties) | bio::chemical::Elementary< T > | inlineprotected |
| Elementary() | bio::chemical::Elementary< T > | inlineprotected |
| EnvironmentDependent(EnvironmentPointer environment=NULL) | bio::chemical::EnvironmentDependent< Solution > | inline |
| EnvironmentPointer typedef | bio::chemical::EnvironmentDependent< Solution > | |
| EnvironmentType typedef | bio::chemical::EnvironmentDependent< Solution > | |
| Filterable() | bio::physical::Filterable | |
| Filterable(Filter filter) | bio::physical::Filterable | |
| ForEachBond(BondVisitor visitor, void *context=NULL) const | bio::chemical::Atom | |
| ForEachBondMutable(BondMutator mutator, void *context=NULL) | bio::chemical::Atom | |
| FormBond(T toBond, BondType type=bond_type::Unknown()) | bio::chemical::Atom | inline |
| FormBondImplementation(Pointer< physical::Wave > toBond, AtomicNumber id, BondType type) | bio::chemical::Atom | virtual |
| FormBondImplementation(Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded) | bio::chemical::Atom | |
| FormBondImplementationLocked(Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded) | bio::chemical::Atom | |
| GetAllBonds() | bio::chemical::Atom | |
| GetAllBonds() const | bio::chemical::Atom | |
| GetBonded(Valence position) | bio::chemical::Atom | |
| GetBonded(Valence position) const | bio::chemical::Atom | |
| GetBondId() | bio::chemical::Atom | inlinestatic |
| GetBondPosition(AtomicNumber bondedId) const | bio::chemical::Atom | |
| GetBondPosition(const Name &typeName) const | bio::chemical::Atom | |
| GetBondPosition() const | bio::chemical::Atom | inline |
| GetBondPositionLocked(AtomicNumber bondedId) const | bio::chemical::Atom | |
| GetBondType(Valence position) const | bio::chemical::Atom | |
| GetBondType() const | bio::chemical::Atom | inline |
| GetClassProperties() | bio::physical::Periodic | static |
| GetConcentration() const | bio::chemical::Solute | virtual |
| GetDefaultInterval() | bio::physical::Periodic | static |
| GetDiffusionEffort() const | bio::chemical::Solute | virtual |
| GetDiffusionTime() const | bio::chemical::Solute | virtual |
| GetDissolvedSubstance() | bio::chemical::Solute | |
| GetDissolvedSubstance() const | bio::chemical::Solute | |
| GetEnvironment() | bio::chemical::EnvironmentDependent< Solution > | inlinevirtual |
| GetEnvironment() const | bio::chemical::EnvironmentDependent< Solution > | inlinevirtual |
| GetFilter() const | bio::physical::Filterable | |
| GetId() const | bio::physical::Identifiable< Id > | inlinevirtual |
| GetIndexInParentSolution() const | bio::chemical::Solute | virtual |
| GetInterval() const | bio::physical::Periodic | |
| GetIntervalInSeconds() const | bio::physical::Periodic | |
| GetName() const | bio::physical::Identifiable< Id > | inlinevirtual |
| GetPerspective() const | bio::physical::Observer< PERSPECTIVE > | inlinevirtual |
| Class< Solute >::GetProperties() const | bio::chemical::Class< Solute > | inlinevirtual |
| bio::physical::Periodic::GetProperties() const | bio::physical::Periodic | virtual |
| bio::Class< Solute >::GetResonanceBetween(ConstWaves waves) | bio::physical::Wave | static |
| bio::Class< Solute >::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2) | bio::physical::Wave | static |
| bio::Class< Solute >::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties) | bio::physical::Wave | static |
| Identifiable< Id >::Class< Solute >::GetResonanceBetween(ConstWaves waves) | bio::physical::Wave | static |
| Identifiable< Id >::Class< Solute >::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2) | bio::physical::Wave | static |
| Identifiable< Id >::Class< Solute >::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties) | bio::physical::Wave | static |
| bio::log::Writer::Class< Solute >::GetResonanceBetween(ConstWaves waves) | bio::physical::Wave | static |
| bio::log::Writer::Class< Solute >::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2) | bio::physical::Wave | static |
| bio::log::Writer::Class< Solute >::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties) | bio::physical::Wave | static |
| bio::chemical::Atom::Class< Solute >::GetResonanceBetween(ConstWaves waves) | bio::physical::Wave | static |
| bio::chemical::Atom::Class< Solute >::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2) | bio::physical::Wave | static |
| bio::chemical::Atom::Class< Solute >::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties) | bio::physical::Wave | static |
| bio::physical::Periodic::GetResonanceBetween(ConstWaves waves) | bio::physical::Wave | static |
| bio::physical::Periodic::GetResonanceBetween(Pointer< const Wave > wave1, Pointer< const Wave > wave2) | bio::physical::Wave | static |
| bio::physical::Periodic::GetResonanceBetween(Pointer< const Wave > wave, const Properties &properties) | bio::physical::Wave | static |
| bio::Class< Solute >::GetSymmetry() const | bio::physical::Wave | |
| Identifiable< Id >::Class< Solute >::GetSymmetry() const | bio::physical::Wave | |
| bio::log::Writer::Class< Writer >::Class< Solute >::GetSymmetry() const | bio::physical::Wave | |
| bio::chemical::Atom::Class< Solute >::GetSymmetry() const | bio::physical::Wave | |
| bio::physical::Periodic::GetSymmetry() const | bio::physical::Wave | |
| GetTimeLastCrested() const | bio::physical::Periodic | |
| bio::Class< Solute >::GetTypeId() const | bio::physical::Wave | inline |
| Identifiable< Id >::Class< Solute >::GetTypeId() const | bio::physical::Wave | inline |
| bio::log::Writer::Class< Writer >::Class< Solute >::GetTypeId() const | bio::physical::Wave | inline |
| bio::chemical::Atom::Class< Solute >::GetTypeId() const | bio::physical::Wave | inline |
| bio::physical::Periodic::GetTypeId() const | bio::physical::Wave | inline |
| Class< Solute >::bio::GetWaveObject() | bio::physical::Class< T > | inlinevirtual |
| Class< Solute >::bio::GetWaveObject() const | bio::physical::Class< T > | inlinevirtual |
| Class< Solute >::bio::log::Writer::Class< Writer >::GetWaveObject() | bio::physical::Class< Writer > | inlinevirtual |
| Class< Solute >::bio::log::Writer::GetWaveObject() const | bio::physical::Class< Writer > | inlinevirtual |
| Class< Solute >::bio::log::Writer::bio::physical::Filterable::GetWaveObject() | bio::physical::Class< Filterable > | inlinevirtual |
| Class< Solute >::bio::physical::Filterable::GetWaveObject() const | bio::physical::Class< Filterable > | inlinevirtual |
| Class< Solute >::bio::chemical::Atom::GetWaveObject() | bio::physical::Class< Atom > | inlinevirtual |
| Class< Solute >::bio::chemical::Atom::GetWaveObject() const | bio::physical::Class< Atom > | inlinevirtual |
| bio::physical::Periodic::GetWaveObject() | bio::physical::Class< Periodic > | inlinevirtual |
| bio::physical::Periodic::GetWaveObject() const | bio::physical::Class< Periodic > | inlinevirtual |
| Identifiable(Pointer< Perspective< Id > > perspective=NULL) | bio::physical::Identifiable< Id > | inlineexplicit |
| Identifiable(const Name &name, Pointer< Perspective< Id > > perspective=NULL) | bio::physical::Identifiable< Id > | inlineexplicit |
| Identifiable(Identifier id, Pointer< Perspective< Id > > perspective=NULL) | bio::physical::Identifiable< Id > | inlineexplicit |
| Identifiable(const Identifiable &other) | bio::physical::Identifiable< Id > | inline |
| Identifier typedef | bio::physical::Identifiable< Id > | |
| Ids typedef | bio::physical::Identifiable< Id > | |
| IndexBond(AtomicNumber bondedId, Valence position) | bio::chemical::Atom | protected |
| Class< Solute >::Initialize(ByteStreams &args) | bio::VirtualBase | protected |
| Class< Solute >::Initialize(ByteStream arg1) | bio::VirtualBase | protected |
| Class< Solute >::Initialize(ByteStream arg1, ByteStream arg2) | bio::VirtualBase | protected |
| Class< Solute >::Initialize(ByteStream arg1, ByteStream arg2, ByteStream arg3) | bio::VirtualBase | protected |
| bio::physical::Periodic::Initialize(ByteStreams &args) | bio::VirtualBase | protected |
| bio::physical::Periodic::Initialize(ByteStream arg1) | bio::VirtualBase | protected |
| bio::physical::Periodic::Initialize(ByteStream arg1, ByteStream arg2) | bio::VirtualBase | protected |
| bio::physical::Periodic::Initialize(ByteStream arg1, ByteStream arg2, ByteStream arg3) | bio::VirtualBase | protected |
| Class< Solute >::Identifiable< Id >::InitializeImplementation(ByteStreams &args) | bio::physical::Identifiable< Id > | inlineprotectedvirtual |
| Class< Solute >::bio::log::Writer::InitializeImplementation(ByteStreams &args) | bio::physical::Filterable | virtual |
| bio::physical::Periodic::InitializeImplementation(ByteStreams &args) | bio::physical::Periodic | virtual |
| IsEnabled(LogLevel level) const | bio::log::Writer | |
| IsId(Identifier id) const | bio::physical::Identifiable< Id > | inlinevirtual |
| IsName(const Name &name) const | bio::physical::Identifiable< Id > | inlinevirtual |
| IsNameInsensitive(const Name &name) const | bio::physical::Identifiable< Id > | inlinevirtual |
| LockMutexShared() const | bio::ThreadSafe | |
| LockThread() const | bio::ThreadSafe | |
| Log(LogLevel level, const char *format, va_list args) const | bio::log::Writer | virtual |
| Log(Pointer< const Writer > writer, LogLevel level, const char *format,...) | bio::log::Writer | static |
| MakePeriodicSymmetry() | bio::physical::Periodic | static |
| mBackflowPreventer | bio::chemical::Atom | protected |
| mBondIndex | bio::chemical::Atom | protected |
| mBonds | bio::chemical::Atom | protected |
| mDiffusionEffort | bio::chemical::Solute | protected |
| mDiffusionTime | bio::chemical::Solute | protected |
| mDissolvedSubstance | bio::chemical::Solute | protected |
| mEnvironment | bio::chemical::EnvironmentDependent< Solution > | protected |
| mFilter | bio::physical::Filterable | protected |
| Class< Solute >::mHasBeenInitialized | bio::VirtualBase | protected |
| bio::physical::Periodic::mHasBeenInitialized | bio::VirtualBase | protected |
| bio::Class< Solute >::mHasSignal | bio::physical::Wave | protected |
| Identifiable< Id >::Class< Solute >::mHasSignal | bio::physical::Wave | protected |
| bio::log::Writer::Class< Writer >::Class< Solute >::mHasSignal | bio::physical::Wave | protected |
| bio::chemical::Atom::Class< Solute >::mHasSignal | bio::physical::Wave | protected |
| bio::physical::Periodic::mHasSignal | bio::physical::Wave | protected |
| mIndexInParent | bio::chemical::Solute | mutableprotected |
| mInterval | bio::physical::Periodic | protected |
| MixWith(const Solute &other) | bio::chemical::Solute | virtual |
| MixWith(Pointer< const Substance > other) | bio::chemical::Solute | virtual |
| mLastCrestTimestamp | bio::physical::Periodic | protected |
| Class< Solute >::bio::mObject | bio::physical::Class< T > | mutableprotected |
| Class< Solute >::Identifiable< Id >::mObject | bio::physical::Class< T > | mutableprotected |
| Class< Solute >::bio::log::Writer::Class< Writer >::mObject | bio::physical::Class< Writer > | mutableprotected |
| Class< Solute >::bio::log::Writer::bio::physical::Filterable::mObject | bio::physical::Class< Filterable > | mutableprotected |
| Class< Solute >::bio::chemical::Atom::mObject | bio::physical::Class< Atom > | mutableprotected |
| bio::physical::Periodic::mObject | bio::physical::Class< Periodic > | mutableprotected |
| Modulate(Pointer< ::bio::physical::Wave > signal) | bio::chemical::Class< Solute > | inlinevirtual |
| bio::physical::Class::Modulate(Pointer< Wave > signal) | bio::physical::Wave | virtual |
| mParentSolute | bio::chemical::Solute | mutableprotected |
| bio::Class< Solute >::mSymmetry | bio::physical::Wave | mutableprotected |
| Identifiable< Id >::Class< Solute >::mSymmetry | bio::physical::Wave | mutableprotected |
| bio::log::Writer::Class< Writer >::Class< Solute >::mSymmetry | bio::physical::Wave | mutableprotected |
| bio::chemical::Atom::Class< Solute >::mSymmetry | bio::physical::Wave | mutableprotected |
| bio::physical::Periodic::mSymmetry | bio::physical::Wave | mutableprotected |
| bio::Class< Solute >::mTypeId | bio::physical::Wave | protected |
| Identifiable< Id >::Class< Solute >::mTypeId | bio::physical::Wave | protected |
| bio::log::Writer::Class< Writer >::Class< Solute >::mTypeId | bio::physical::Wave | protected |
| bio::chemical::Atom::Class< Solute >::mTypeId | bio::physical::Wave | protected |
| bio::physical::Periodic::mTypeId | bio::physical::Wave | protected |
| Observer(Pointer< Perspective > perspective=NULL) | bio::physical::Observer< PERSPECTIVE > | inlineexplicit |
| Observer(const Observer &other) | bio::physical::Observer< PERSPECTIVE > | inline |
| operator Atom &() | bio::physical::Class< Atom > | inlinevirtual |
| operator const Atom &() const | bio::physical::Class< Atom > | inlinevirtual |
| operator const Filterable &() const | bio::physical::Class< Filterable > | inlinevirtual |
| operator const Periodic &() const | bio::physical::Class< Periodic > | inlinevirtual |
| operator const T &() const | bio::physical::Class< T > | inlinevirtual |
| operator const Writer &() const | bio::physical::Class< Writer > | inlinevirtual |
| operator Filterable &() | bio::physical::Class< Filterable > | inlinevirtual |
| operator Id() const | bio::physical::Identifiable< Id > | inlinevirtual |
| operator Periodic &() | bio::physical::Class< Periodic > | inlinevirtual |
| operator Pointer< ::bio::physical::Wave >() | bio::chemical::Class< Solute > | inline |
| operator Pointer< const Substance >() const | bio::chemical::Solute | inline |
| operator Pointer< Substance >() | bio::chemical::Solute | inline |
| Class< Solute >::bio::operator Pointer< Wave >() | bio::physical::Class< T > | inlinevirtual |
| Class< Solute >::bio::log::Writer::Class< Writer >::operator Pointer< Wave >() | bio::physical::Class< Writer > | inlinevirtual |
| Class< Solute >::bio::log::Writer::bio::physical::Filterable::operator Pointer< Wave >() | bio::physical::Class< Filterable > | inlinevirtual |
| Class< Solute >::bio::chemical::Atom::operator Pointer< Wave >() | bio::physical::Class< Atom > | inlinevirtual |
| bio::physical::Periodic::operator Pointer< Wave >() | bio::physical::Class< Periodic > | inlinevirtual |
| operator T() const | bio::chemical::Atom | |
| operator T&() | bio::physical::Class< T > | inlinevirtual |
| operator Writer &() | bio::physical::Class< Writer > | inlinevirtual |
| operator*(Pointer< Wave > signal) | bio::physical::Wave | virtual |
| operator*() | bio::physical::Wave | virtual |
| operator*() const | bio::physical::Wave | virtual |
| operator+(Pointer< const Wave > other) | bio::physical::Wave | virtual |
| operator-(Pointer< const Wave > other) | bio::physical::Wave | virtual |
| operator<<(std::ostream &out, const Identifiable< Id > &t) | bio::physical::Identifiable< Id > | inlineprotected |
| operator=(const Solute &other) | bio::chemical::Solute | |
| Class< Solute >::operator=(const Wave &other) | bio::physical::Wave | |
| Class< Solute >::operator=(const Wave &other) | bio::physical::Wave | |
| Class< Solute >::operator=(const ThreadSafe &toCopy) | bio::ThreadSafe | |
| bio::physical::Periodic::operator=(const Wave &other) | bio::physical::Wave | |
| operator==(const Identifier id) const | bio::physical::Identifiable< Id > | inlinevirtual |
| operator==(const Name &name) const | bio::physical::Identifiable< Id > | inlinevirtual |
| operator==(const Identifiable< Id > &other) const | bio::physical::Identifiable< Id > | inlinevirtual |
| operator|(Pointer< Symmetry > symmetry) | bio::physical::Wave | virtual |
| Periodic(Milliseconds interval=GetDefaultInterval()) | bio::physical::Periodic | |
| Perspective typedef | bio::physical::Observer< PERSPECTIVE > | |
| RegisterProperties(const Properties &properties) | bio::chemical::Class< Solute > | inlinevirtual |
| RegisterType() | bio::chemical::Elementary< T > | inlineprotected |
| Class< Solute >::bio::Reify(Pointer< const Symmetry > symmetry) | bio::physical::Wave | virtual |
| Class< Solute >::bio::log::Writer::bio::physical::Filterable::Reify(Pointer< const Symmetry > symmetry) | bio::physical::Filterable | virtual |
| Class< Solute >::bio::chemical::Atom::Reify(Pointer< const physical::Symmetry > symmetry) | bio::chemical::Atom | virtual |
| bio::physical::Periodic::Reify(Pointer< const Symmetry > symmetry) | bio::physical::Periodic | virtual |
| ResolveBondedForReadById(AtomicNumber bondId) const | bio::chemical::Atom | |
| ResolveBondedForWriteById(AtomicNumber bondId) | bio::chemical::Atom | |
| SetDiffusionEffort(const DiffusionEffort &diffusionEffort) | bio::chemical::Solute | virtual |
| SetDiffusionTime(const DiffusionTime &diffusionTime) | bio::chemical::Solute | virtual |
| SetEnvironment(Pointer< Solution > environment) | bio::chemical::Solute | virtual |
| EnvironmentDependent< Solution >::SetEnvironment(EnvironmentPointer environment) | bio::chemical::EnvironmentDependent< Solution > | inlinevirtual |
| SetFilter(Filter filter) | bio::physical::Filterable | virtual |
| SetId(Identifier id) | bio::physical::Identifiable< Id > | inlinevirtual |
| SetIndexInParentSolution(Index indexInParentSolution) | bio::chemical::Solute | virtual |
| SetInterval(Milliseconds interval) | bio::physical::Periodic | virtual |
| SetLastCrestTimestamp(Timestamp lastCrest) | bio::physical::Periodic | virtual |
| SetName(const Name &name) | bio::physical::Identifiable< Id > | inlinevirtual |
| SetPerspective(Pointer< Perspective< Id > > perspective) | bio::physical::Identifiable< Id > | inlinevirtual |
| bio::physical::Observer::SetPerspective(Pointer< Perspective > perspective) | bio::physical::Observer< PERSPECTIVE > | inlinevirtual |
| bio::Class< Solute >::SetTypeId(uint16_t typeId) | bio::physical::Wave | inline |
| Identifiable< Id >::Class< Solute >::SetTypeId(uint16_t typeId) | bio::physical::Wave | inline |
| bio::log::Writer::Class< Writer >::Class< Solute >::SetTypeId(uint16_t typeId) | bio::physical::Wave | inline |
| bio::chemical::Atom::Class< Solute >::SetTypeId(uint16_t typeId) | bio::physical::Wave | inline |
| bio::physical::Periodic::SetTypeId(uint16_t typeId) | bio::physical::Wave | inline |
| ShouldLog(Pointer< const Writer > writer, LogLevel level) | bio::log::Writer | static |
| Solute(Pointer< Substance > dissolvedSubstance, const DiffusionTime &diffusionTime=diffusion::time::Destruction(), const DiffusionEffort &diffusionEffort=diffusion::effort::Active()) | bio::chemical::Solute | |
| Solution | bio::chemical::Solute | friend |
| Class< Solute >::bio::Spin() const | bio::physical::Wave | virtual |
| Class< Solute >::bio::log::Writer::bio::physical::Filterable::Spin() const | bio::physical::Filterable | virtual |
| Class< Solute >::bio::chemical::Atom::Spin() const | bio::chemical::Atom | virtual |
| bio::physical::Periodic::Spin() const | bio::physical::Periodic | virtual |
| Superpose(const ::bio::physical::ConstWaves &displacement, Pointer< ::bio::physical::Interference > pattern) | bio::chemical::Class< Solute > | inlinevirtual |
| Superpose(Pointer< const ::bio::physical::Wave > displacement, Pointer< ::bio::physical::Interference > pattern) | bio::chemical::Class< Solute > | inlinevirtual |
| bio::physical::Class::Superpose(Pointer< const Wave > displacement, Pointer< Interference > pattern) | bio::physical::Wave | virtual |
| bio::physical::Class::Superpose(const ConstWaves &displacement, Pointer< Interference > pattern) | bio::physical::Wave | virtual |
| ThreadSafe() | bio::ThreadSafe | |
| ThreadSafe(const ThreadSafe &toCopy) | bio::ThreadSafe | |
| UnindexBond(AtomicNumber bondedId) | bio::chemical::Atom | protected |
| UnlockMutexShared() const | bio::ThreadSafe | |
| UnlockThread() const | bio::ThreadSafe | |
| Class< Solute >::VirtualBase() | bio::VirtualBase | protected |
| bio::physical::Periodic::VirtualBase() | bio::VirtualBase | protected |
| bio::Class< Solute >::Wave(Pointer< Symmetry > symmetry=NULL) | bio::physical::Wave | |
| bio::Class< Solute >::Wave(const Wave &other) | bio::physical::Wave | |
| Identifiable< Id >::Class< Solute >::Wave(Pointer< Symmetry > symmetry=NULL) | bio::physical::Wave | |
| Identifiable< Id >::Class< Solute >::Wave(const Wave &other) | bio::physical::Wave | |
| bio::log::Writer::Class< Solute >::Wave(Pointer< Symmetry > symmetry=NULL) | bio::physical::Wave | |
| bio::log::Writer::Class< Solute >::Wave(const Wave &other) | bio::physical::Wave | |
| bio::chemical::Atom::Class< Solute >::Wave(Pointer< Symmetry > symmetry=NULL) | bio::physical::Wave | |
| bio::chemical::Atom::Class< Solute >::Wave(const Wave &other) | bio::physical::Wave | |
| bio::physical::Periodic::Wave(Pointer< Symmetry > symmetry=NULL) | bio::physical::Wave | |
| bio::physical::Periodic::Wave(const Wave &other) | bio::physical::Wave | |
| Writer() | bio::log::Writer | |
| Writer(Filter logFilter) | bio::log::Writer | |
| ~Atom() | bio::chemical::Atom | virtual |
| Class< Solute >::~Class() | bio::chemical::Class< Solute > | inlinevirtual |
| bio::physical::Periodic::~Class() | bio::physical::Class< Periodic > | inlinevirtual |
| ~Elementary() | bio::chemical::Elementary< T > | inlineprotectedvirtual |
| ~EnvironmentDependent() | bio::chemical::EnvironmentDependent< Solution > | inlinevirtual |
| ~Filterable() | bio::physical::Filterable | virtual |
| ~Identifiable() | bio::physical::Identifiable< Id > | inlinevirtual |
| ~Observer() | bio::physical::Observer< PERSPECTIVE > | inlinevirtual |
| ~Periodic() | bio::physical::Periodic | virtual |
| ~Solute() | bio::chemical::Solute | virtual |
| ~ThreadSafe() | bio::ThreadSafe | |
| ~VirtualBase() | bio::VirtualBase | protectedvirtual |
| ~Wave() | bio::physical::Wave | virtual |
| ~Writer() | bio::log::Writer | virtual |
