|
| | Impulse (FiringCondition trigger=firing_condition::None(), Name impulseName="", Pointer< Neuron > caller=NULL, bool shouldBeActive=true) |
| |
| virtual | ~Impulse () |
| |
| FiringCondition | GetTrigger () const |
| |
| Pointer< molecular::Protein > | GetImpulseProtein () |
| |
| void | SetCaller (Pointer< Neuron > caller) |
| |
| bool | Send () |
| |
| virtual Pointer< ::bio::physical::Wave > | Clone () const |
| |
| Pointer< ::bio::physical::Wave > | AsWave () |
| |
| Pointer< const ::bio::physical::Wave > | AsWave () const |
| |
| | operator Pointer< ::bio::physical::Wave > () |
| |
| virtual Pointer< ::bio::physical::Wave > | Modulate (Pointer< ::bio::physical::Wave > signal) |
| |
| virtual Pointer< ::bio::physical::Wave > | Demodulate () |
| |
| virtual Pointer< const ::bio::physical::Wave > | Demodulate () const |
| |
| virtual Pointer< ::bio::physical::Wave > | Superpose (const ::bio::physical::ConstWaves &displacement, Pointer< ::bio::physical::Interference > pattern) |
| |
| virtual bool | Superpose (Pointer< const ::bio::physical::Wave > displacement, Pointer< ::bio::physical::Interference > pattern) |
| |
| | Class (Pointer< Impulse > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object()) |
| |
| | Class (Pointer< Impulse > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object()) |
| |
| | Class (Pointer< Impulse > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object()) |
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| | Class (const Class &other) |
| |
| virtual | ~Class () |
| |
| virtual bool | RegisterProperties (const Properties &properties) |
| |
| virtual Properties | GetProperties () const |
| |
| virtual Pointer< Atom > | AsAtom () |
| |
| virtual Pointer< const Atom > | AsAtom () const |
| |
| virtual Code | Attenuate (Pointer< const physical::Wave > other) |
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| virtual Code | Disattenuate (Pointer< const physical::Wave > other) |
| |
| | Class (Pointer< T > object, Pointer< Symmetry > symmetry=NULL) |
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| | Class (Pointer< T > object, SymmetryFactory symmetryFactory) |
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| | Class (const Class &other) |
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| virtual Pointer< T > | GetWaveObject () |
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| virtual Pointer< const T > | GetWaveObject () const |
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| virtual | operator T& () |
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| virtual | operator const T & () const |
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| Pointer< Wave > | AsWave () |
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| Pointer< const Wave > | AsWave () const |
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| virtual | operator Pointer< Wave > () |
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| | Wave (Pointer< Symmetry > symmetry=NULL) |
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| | Wave (const Wave &other) |
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| Wave & | operator= (const Wave &other) |
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| virtual | ~Wave () |
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| Pointer< const Symmetry > | GetSymmetry () const |
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| virtual bool | Superpose (Pointer< const Wave > displacement, Pointer< Interference > pattern) |
| |
| virtual Pointer< Wave > | Superpose (const ConstWaves &displacement, Pointer< Interference > pattern) |
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| virtual Pointer< Wave > | Modulate (Pointer< Wave > signal) |
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| Pointer< Wave > | AsWave () |
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| Pointer< const Wave > | AsWave () const |
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| virtual void | operator| (Pointer< Symmetry > symmetry) |
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| virtual Pointer< Wave > | operator* (Pointer< Wave > signal) |
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| virtual Pointer< Wave > | operator* () |
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| virtual Pointer< const Wave > | operator* () const |
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| virtual void | operator+ (Pointer< const Wave > other) |
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| virtual void | operator- (Pointer< const Wave > other) |
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| uint16_t | GetTypeId () const |
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| void | SetTypeId (uint16_t typeId) |
| |
| | Identifiable (Pointer< Perspective< Id > > perspective=NULL) |
| |
| | Identifiable (const Name &name, Pointer< Perspective< Id > > perspective=NULL) |
| |
| | Identifiable (Identifier id, Pointer< Perspective< Id > > perspective=NULL) |
| |
| | Identifiable (const Identifiable &other) |
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| virtual | ~Identifiable () |
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| virtual | operator Id () const |
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| virtual bool | operator== (const Identifier id) const |
| |
| virtual bool | operator== (const Name &name) const |
| |
| virtual bool | operator== (const Identifiable< Id > &other) const |
| |
| virtual Name | GetName () const |
| |
| virtual Identifier | GetId () const |
| |
| virtual bool | SetName (const Name &name) |
| |
| virtual bool | SetId (Identifier id) |
| |
| virtual bool | IsName (const Name &name) const |
| |
| virtual bool | IsNameInsensitive (const Name &name) const |
| |
| virtual bool | IsId (Identifier id) const |
| |
| virtual void | SetPerspective (Pointer< Perspective< Id > > perspective) |
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| | Observer (Pointer< Perspective > perspective=NULL) |
| |
| | Observer (const Observer &other) |
| |
| virtual | ~Observer () |
| |
| virtual void | SetPerspective (Pointer< Perspective > perspective) |
| |
| virtual Pointer< Perspective > | GetPerspective () const |
| |
| | Writer () |
| |
| | Writer (Filter logFilter) |
| |
| virtual | ~Writer () |
| |
| virtual Pointer< const Writer > | AsLogWriter () const |
| |
| bool | IsEnabled (LogLevel level) const |
| |
| virtual void | Log (LogLevel level, const char *format, va_list args) const |
| |
| | Class (Pointer< Writer > object, Pointer< Symmetry > symmetry=NULL) |
| |
| | Class (Pointer< Writer > object, SymmetryFactory symmetryFactory) |
| |
| | Class (const Class &other) |
| |
| virtual Pointer< Writer > | GetWaveObject () |
| |
| virtual Pointer< const Writer > | GetWaveObject () const |
| |
| virtual | operator Writer & () |
| |
| virtual | operator const Writer & () const |
| |
| Pointer< Wave > | AsWave () |
| |
| Pointer< const Wave > | AsWave () const |
| |
| virtual | operator Pointer< Wave > () |
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| | Filterable () |
| |
| | Filterable (Filter filter) |
| |
| virtual | ~Filterable () |
| |
| virtual void | InitializeImplementation (ByteStreams &args) |
| |
| virtual void | SetFilter (Filter filter) |
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| Filter | GetFilter () const |
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| virtual Pointer< const Symmetry > | Spin () const |
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| virtual Code | Reify (Pointer< const Symmetry > symmetry) |
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| | Class (Pointer< Filterable > object, Pointer< Symmetry > symmetry=NULL) |
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| | Class (Pointer< Filterable > object, SymmetryFactory symmetryFactory) |
| |
| | Class (const Class &other) |
| |
| virtual Pointer< Filterable > | GetWaveObject () |
| |
| virtual Pointer< const Filterable > | GetWaveObject () const |
| |
| virtual | operator Filterable & () |
| |
| virtual | operator const Filterable & () const |
| |
| Pointer< Wave > | AsWave () |
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| Pointer< const Wave > | AsWave () const |
| |
| virtual | operator Pointer< Wave > () |
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| | Atom () |
| |
| | Atom (const Atom &other) |
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| virtual | ~Atom () |
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| void | CloneBondsFrom (const Atom &other, BondClonePolicy policy=&Atom::DefaultBondClonePolicy) |
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| virtual Pointer< const physical::Symmetry > | Spin () const |
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| virtual Code | Reify (Pointer< const physical::Symmetry > symmetry) |
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| Pointer< physical::Wave > | GetBonded (Valence position) |
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| Pointer< const physical::Wave > | GetBonded (Valence position) const |
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| Pointer< const physical::Wave > | ResolveBondedForReadById (AtomicNumber bondId) const |
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| Pointer< physical::Wave > | ResolveBondedForWriteById (AtomicNumber bondId) |
| |
| template<typename T > |
| Cow< T > | AsBonded () const |
| |
| template<typename T > |
| Pointer< T > | AsBondedQuantum () const |
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| template<typename T > |
| atom_detail::AsResultType< T, type::IsWaveImplementation< typenametype::RemovePointer< T >::Type >::sValue >::Type | As () const |
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| template<typename T > |
| | operator T () const |
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| template<typename T > |
| Valence | FormBond (T toBond, BondType type=bond_type::Unknown()) |
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| template<typename T > |
| bool | BreakBond (T toDisassociate, BondType type=bond_type::Unknown()) |
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| Valence | GetBondPosition (AtomicNumber bondedId) const |
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| Valence | GetBondPosition (const Name &typeName) const |
| |
| Valence | GetBondPositionLocked (AtomicNumber bondedId) const |
| |
| template<typename T > |
| Valence | GetBondPosition () const |
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| BondType | GetBondType (Valence position) const |
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| template<typename T > |
| BondType | GetBondType () const |
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| Pointer< Bonds > | GetAllBonds () |
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| Pointer< const Bonds > | GetAllBonds () const |
| |
| void | ForEachBond (BondVisitor visitor, void *context=NULL) const |
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| void | ForEachBondMutable (BondMutator mutator, void *context=NULL) |
| |
| virtual Valence | FormBondImplementation (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type) |
| |
| Valence | FormBondImplementation (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded) |
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| Valence | FormBondImplementationLocked (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded) |
| |
| virtual bool | BreakBondImplementation (AtomicNumber id, BondType type) |
| |
| bool | BreakBondImplementationLocked (AtomicNumber id, BondType type) |
| |
| | Class (Pointer< Atom > object, Pointer< Symmetry > symmetry=NULL) |
| |
| | Class (Pointer< Atom > object, SymmetryFactory symmetryFactory) |
| |
| | Class (const Class &other) |
| |
| virtual Pointer< Atom > | GetWaveObject () |
| |
| virtual Pointer< const Atom > | GetWaveObject () const |
| |
| virtual | operator Atom & () |
| |
| virtual | operator const Atom & () const |
| |
| Pointer< Wave > | AsWave () |
| |
| Pointer< const Wave > | AsWave () const |
| |
| virtual | operator Pointer< Wave > () |
| |
| | ThreadSafe () |
| |
| | ThreadSafe (const ThreadSafe &toCopy) |
| |
| ThreadSafe & | operator= (const ThreadSafe &toCopy) |
| |
| | ~ThreadSafe () |
| |
| void | LockThread () const |
| |
| void | UnlockThread () const |
| |
| void | LockMutexShared () const |
| |
| void | UnlockMutexShared () const |
| |
|
| typedef Id | Identifier |
| |
| typedef Arrangement< Identifier > | Ids |
| |
| typedef PERSPECTIVE | Perspective |
| |
| typedef BondCloneAction(* | BondClonePolicy) (const Bond &bond) |
| |
| typedef void(* | BondVisitor) (const Bond &bond, void *context) |
| |
| typedef BondCloneAction(* | BondMutator) (Bond &bond, void *context) |
| |
| static Pointer< T > | Convert (Pointer< Wave > wave) |
| |
| static Properties | GetResonanceBetween (ConstWaves waves) |
| |
| static Properties | GetResonanceBetween (Pointer< const Wave > wave1, Pointer< const Wave > wave2) |
| |
| static Properties | GetResonanceBetween (Pointer< const Wave > wave, const Properties &properties) |
| |
| static void | Log (Pointer< const Writer > writer, LogLevel level, const char *format,...) |
| |
| static bool | ShouldLog (Pointer< const Writer > writer, LogLevel level) |
| |
| static Pointer< Writer > | Convert (Pointer< Wave > wave) |
| |
| static Pointer< Filterable > | Convert (Pointer< Wave > wave) |
| |
| static BondCloneAction | DefaultBondClonePolicy (const Bond &bond) |
| |
| template<typename T > |
| static AtomicNumber | GetBondId () |
| |
| static Pointer< Atom > | Convert (Pointer< Wave > wave) |
| |
| typedef Id | Identifier |
| |
| typedef Arrangement< Identifier > | Ids |
| |
| typedef PERSPECTIVE | Perspective |
| |
| typedef BondCloneAction(* | BondClonePolicy) (const Bond &bond) |
| |
| typedef void(* | BondVisitor) (const Bond &bond, void *context) |
| |
| typedef BondCloneAction(* | BondMutator) (Bond &bond, void *context) |
| |
| void | RegisterType () |
| |
| | Elementary (const Properties properties) |
| |
| | Elementary () |
| |
| virtual | ~Elementary () |
| |
| virtual void | InitializeImplementation (ByteStreams &args) |
| |
| friend::std::ostream & | operator<< (std::ostream &out, const Identifiable< Id > &t) |
| |
| | Identifiable (Pointer< Perspective< Id > > perspective=NULL) |
| |
| | Identifiable (const Name &name, Pointer< Perspective< Id > > perspective=NULL) |
| |
| | Identifiable (Identifier id, Pointer< Perspective< Id > > perspective=NULL) |
| |
| | Identifiable (const Identifiable &other) |
| |
| virtual | ~Identifiable () |
| |
| virtual | operator Id () const |
| |
| virtual bool | operator== (const Identifier id) const |
| |
| virtual bool | operator== (const Name &name) const |
| |
| virtual bool | operator== (const Identifiable< Id > &other) const |
| |
| virtual Name | GetName () const |
| |
| virtual Identifier | GetId () const |
| |
| virtual bool | SetName (const Name &name) |
| |
| virtual bool | SetId (Identifier id) |
| |
| virtual bool | IsName (const Name &name) const |
| |
| virtual bool | IsNameInsensitive (const Name &name) const |
| |
| virtual bool | IsId (Identifier id) const |
| |
| virtual void | SetPerspective (Pointer< Perspective< Id > > perspective) |
| |
| | Observer (Pointer< Perspective > perspective=NULL) |
| |
| | Observer (const Observer &other) |
| |
| virtual | ~Observer () |
| |
| virtual void | SetPerspective (Pointer< Perspective > perspective) |
| |
| virtual Pointer< Perspective > | GetPerspective () const |
| |
| | VirtualBase () |
| |
| virtual | ~VirtualBase () |
| |
| void | Initialize (ByteStreams &args) |
| |
| void | Initialize (ByteStream arg1) |
| |
| void | Initialize (ByteStream arg1, ByteStream arg2) |
| |
| void | Initialize (ByteStream arg1, ByteStream arg2, ByteStream arg3) |
| |
| | Writer () |
| |
| | Writer (Filter logFilter) |
| |
| virtual | ~Writer () |
| |
| virtual Pointer< const Writer > | AsLogWriter () const |
| |
| bool | IsEnabled (LogLevel level) const |
| |
| virtual void | Log (LogLevel level, const char *format, va_list args) const |
| |
| | Class (Pointer< Writer > object, Pointer< Symmetry > symmetry=NULL) |
| |
| | Class (Pointer< Writer > object, SymmetryFactory symmetryFactory) |
| |
| | Class (const Class &other) |
| |
| virtual Pointer< Writer > | GetWaveObject () |
| |
| virtual Pointer< const Writer > | GetWaveObject () const |
| |
| virtual | operator Writer & () |
| |
| virtual | operator const Writer & () const |
| |
| Pointer< Wave > | AsWave () |
| |
| Pointer< const Wave > | AsWave () const |
| |
| virtual | operator Pointer< Wave > () |
| |
| | Filterable () |
| |
| | Filterable (Filter filter) |
| |
| virtual | ~Filterable () |
| |
| virtual void | InitializeImplementation (ByteStreams &args) |
| |
| virtual void | SetFilter (Filter filter) |
| |
| Filter | GetFilter () const |
| |
| virtual Pointer< const Symmetry > | Spin () const |
| |
| virtual Code | Reify (Pointer< const Symmetry > symmetry) |
| |
| | Class (Pointer< Filterable > object, Pointer< Symmetry > symmetry=NULL) |
| |
| | Class (Pointer< Filterable > object, SymmetryFactory symmetryFactory) |
| |
| | Class (const Class &other) |
| |
| virtual Pointer< Filterable > | GetWaveObject () |
| |
| virtual Pointer< const Filterable > | GetWaveObject () const |
| |
| virtual | operator Filterable & () |
| |
| virtual | operator const Filterable & () const |
| |
| Pointer< Wave > | AsWave () |
| |
| Pointer< const Wave > | AsWave () const |
| |
| virtual | operator Pointer< Wave > () |
| |
| void | IndexBond (AtomicNumber bondedId, Valence position) |
| |
| void | UnindexBond (AtomicNumber bondedId) |
| |
| | Atom () |
| |
| | Atom (const Atom &other) |
| |
| virtual | ~Atom () |
| |
| void | CloneBondsFrom (const Atom &other, BondClonePolicy policy=&Atom::DefaultBondClonePolicy) |
| |
| virtual Pointer< const physical::Symmetry > | Spin () const |
| |
| virtual Code | Reify (Pointer< const physical::Symmetry > symmetry) |
| |
| Pointer< physical::Wave > | GetBonded (Valence position) |
| |
| Pointer< const physical::Wave > | GetBonded (Valence position) const |
| |
| Pointer< const physical::Wave > | ResolveBondedForReadById (AtomicNumber bondId) const |
| |
| Pointer< physical::Wave > | ResolveBondedForWriteById (AtomicNumber bondId) |
| |
| template<typename T > |
| Cow< T > | AsBonded () const |
| |
| template<typename T > |
| Pointer< T > | AsBondedQuantum () const |
| |
| template<typename T > |
| atom_detail::AsResultType< T, type::IsWaveImplementation< typenametype::RemovePointer< T >::Type >::sValue >::Type | As () const |
| |
| template<typename T > |
| | operator T () const |
| |
| template<typename T > |
| Valence | FormBond (T toBond, BondType type=bond_type::Unknown()) |
| |
| template<typename T > |
| bool | BreakBond (T toDisassociate, BondType type=bond_type::Unknown()) |
| |
| Valence | GetBondPosition (AtomicNumber bondedId) const |
| |
| Valence | GetBondPosition (const Name &typeName) const |
| |
| Valence | GetBondPositionLocked (AtomicNumber bondedId) const |
| |
| template<typename T > |
| Valence | GetBondPosition () const |
| |
| BondType | GetBondType (Valence position) const |
| |
| template<typename T > |
| BondType | GetBondType () const |
| |
| Pointer< Bonds > | GetAllBonds () |
| |
| Pointer< const Bonds > | GetAllBonds () const |
| |
| void | ForEachBond (BondVisitor visitor, void *context=NULL) const |
| |
| void | ForEachBondMutable (BondMutator mutator, void *context=NULL) |
| |
| virtual Valence | FormBondImplementation (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type) |
| |
| Valence | FormBondImplementation (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded) |
| |
| Valence | FormBondImplementationLocked (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded) |
| |
| virtual bool | BreakBondImplementation (AtomicNumber id, BondType type) |
| |
| bool | BreakBondImplementationLocked (AtomicNumber id, BondType type) |
| |
| | Class (Pointer< Atom > object, Pointer< Symmetry > symmetry=NULL) |
| |
| | Class (Pointer< Atom > object, SymmetryFactory symmetryFactory) |
| |
| | Class (const Class &other) |
| |
| virtual Pointer< Atom > | GetWaveObject () |
| |
| virtual Pointer< const Atom > | GetWaveObject () const |
| |
| virtual | operator Atom & () |
| |
| virtual | operator const Atom & () const |
| |
| Pointer< Wave > | AsWave () |
| |
| Pointer< const Wave > | AsWave () const |
| |
| virtual | operator Pointer< Wave > () |
| |
| | ThreadSafe () |
| |
| | ThreadSafe (const ThreadSafe &toCopy) |
| |
| ThreadSafe & | operator= (const ThreadSafe &toCopy) |
| |
| | ~ThreadSafe () |
| |
| void | LockThread () const |
| |
| void | UnlockThread () const |
| |
| void | LockMutexShared () const |
| |
| void | UnlockMutexShared () const |
| |
| static void | Log (Pointer< const Writer > writer, LogLevel level, const char *format,...) |
| |
| static bool | ShouldLog (Pointer< const Writer > writer, LogLevel level) |
| |
| static Pointer< Writer > | Convert (Pointer< Wave > wave) |
| |
| static Pointer< Filterable > | Convert (Pointer< Wave > wave) |
| |
| static BondCloneAction | DefaultBondClonePolicy (const Bond &bond) |
| |
| template<typename T > |
| static AtomicNumber | GetBondId () |
| |
| static Pointer< Atom > | Convert (Pointer< Wave > wave) |
| |
Firing Condition Impulses are simple function pointer wrappers that allow different functions to be called upon different triggers.
firing_condition::Impulses can be enabled/disabled for ease of use.
firing_condition::Impulses should specify the RETURN value for their caller, DetermineAndCallImpulseTriggers(), via the bool shouldBeActive.
Impulses use Name instead of Id as they need to be created before Proteins can be added to them.