#include <SynapseProtein.h>

Inheritance diagram for bio::neural::SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE >:

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Collaboration diagram for bio::neural::SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE >:

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Public Member Functions
	BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS (molecular, SynapseProtein, filter::Neural()) virtual Code RecruitChaperones(Pointer< molecular

virtual Code	Fold ()

virtual Pointer< SYNAPSE_TYPE >	ResolveCaller (Pointer< molecular::Vesicle > context)

Pointer< SYNAPSE_TYPE >	ResolveSynapseLocal (Pointer< molecular::Vesicle > context, Pointer< PRESYNAPTIC_NEURON_TYPE > &postsynapticNeuron, Pointer< POSTSYNAPTIC_NEURON_TYPE > &presynapticNeuron) const

Public Member Functions inherited from bio::molecular::Class< SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE > >
	Class (Pointer< SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE > > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE > > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE > > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

virtual	~Class ()

void	SetEnvironment (Pointer< ENVIRONMENT > environment)

Pointer< ENVIRONMENT >	GetEnvironment ()

const Pointer< ENVIRONMENT >	GetEnvironment () const

Public Member Functions inherited from bio::chemical::Class< T >
virtual Pointer< ::bio::physical::Wave >	Clone () const

Pointer< ::bio::physical::Wave >	AsWave ()

Pointer< const ::bio::physical::Wave >	AsWave () const

	operator Pointer< ::bio::physical::Wave > ()

virtual Pointer< ::bio::physical::Wave >	Modulate (Pointer< ::bio::physical::Wave > signal)

virtual Pointer< ::bio::physical::Wave >	Demodulate ()

virtual Pointer< const ::bio::physical::Wave >	Demodulate () const

virtual Pointer< ::bio::physical::Wave >	Superpose (const ::bio::physical::ConstWaves &displacement, Pointer< ::bio::physical::Interference > pattern)

virtual bool	Superpose (Pointer< const ::bio::physical::Wave > displacement, Pointer< ::bio::physical::Interference > pattern)

	Class (Pointer< T > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< T > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< T > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (const Class &other)

virtual bool	RegisterProperties (const Properties &properties)

virtual Properties	GetProperties () const

virtual Pointer< Atom >	AsAtom ()

virtual Pointer< const Atom >	AsAtom () const

virtual Code	Attenuate (Pointer< const physical::Wave > other)

virtual Code	Disattenuate (Pointer< const physical::Wave > other)

Public Member Functions inherited from bio::physical::Class< T >
	Class (Pointer< T > object, Pointer< Symmetry > symmetry=NULL)

	Class (Pointer< T > object, SymmetryFactory symmetryFactory)

	Class (const Class &other)

virtual Pointer< T >	GetWaveObject ()

virtual Pointer< const T >	GetWaveObject () const

virtual	operator T& ()

virtual	operator const T & () const

Pointer< Wave >	AsWave ()

Pointer< const Wave >	AsWave () const

virtual	operator Pointer< Wave > ()

Public Member Functions inherited from bio::physical::Wave
	Wave (Pointer< Symmetry > symmetry=NULL)

	Wave (const Wave &other)

Wave &	operator= (const Wave &other)

virtual	~Wave ()

Pointer< const Symmetry >	GetSymmetry () const

virtual bool	Superpose (Pointer< const Wave > displacement, Pointer< Interference > pattern)

virtual Pointer< Wave >	Superpose (const ConstWaves &displacement, Pointer< Interference > pattern)

virtual Pointer< Wave >	Modulate (Pointer< Wave > signal)

Pointer< Wave >	AsWave ()

Pointer< const Wave >	AsWave () const

virtual void	operator\| (Pointer< Symmetry > symmetry)

virtual Pointer< Wave >	operator* (Pointer< Wave > signal)

virtual Pointer< Wave >	operator* ()

virtual Pointer< const Wave >	operator* () const

virtual void	operator+ (Pointer< const Wave > other)

virtual void	operator- (Pointer< const Wave > other)

uint16_t	GetTypeId () const

void	SetTypeId (uint16_t typeId)

Public Member Functions inherited from bio::physical::Identifiable< Id >
	Identifiable (Pointer< Perspective< Id > > perspective=NULL)

	Identifiable (const Name &name, Pointer< Perspective< Id > > perspective=NULL)

	Identifiable (Identifier id, Pointer< Perspective< Id > > perspective=NULL)

	Identifiable (const Identifiable &other)

virtual	~Identifiable ()

virtual	operator Id () const

virtual bool	operator== (const Identifier id) const

virtual bool	operator== (const Name &name) const

virtual bool	operator== (const Identifiable< Id > &other) const

virtual Name	GetName () const

virtual Identifier	GetId () const

virtual bool	SetName (const Name &name)

virtual bool	SetId (Identifier id)

virtual bool	IsName (const Name &name) const

virtual bool	IsNameInsensitive (const Name &name) const

virtual bool	IsId (Identifier id) const

virtual void	SetPerspective (Pointer< Perspective< Id > > perspective)

Public Member Functions inherited from bio::physical::Observer< PERSPECTIVE >
	Observer (Pointer< Perspective > perspective=NULL)

	Observer (const Observer &other)

virtual	~Observer ()

virtual void	SetPerspective (Pointer< Perspective > perspective)

virtual Pointer< Perspective >	GetPerspective () const

Public Member Functions inherited from bio::log::Writer
	Writer ()

	Writer (Filter logFilter)

virtual	~Writer ()

virtual Pointer< const Writer >	AsLogWriter () const

bool	IsEnabled (LogLevel level) const

virtual void	Log (LogLevel level, const char *format, va_list args) const

Public Member Functions inherited from bio::physical::Class< Writer >
	Class (Pointer< Writer > object, Pointer< Symmetry > symmetry=NULL)

	Class (Pointer< Writer > object, SymmetryFactory symmetryFactory)

	Class (const Class &other)

virtual Pointer< Writer >	GetWaveObject ()

virtual Pointer< const Writer >	GetWaveObject () const

virtual	operator Writer & ()

virtual	operator const Writer & () const

Pointer< Wave >	AsWave ()

Pointer< const Wave >	AsWave () const

virtual	operator Pointer< Wave > ()

Public Member Functions inherited from bio::physical::Filterable
	Filterable ()

	Filterable (Filter filter)

virtual	~Filterable ()

virtual void	InitializeImplementation (ByteStreams &args)

virtual void	SetFilter (Filter filter)

Filter	GetFilter () const

Public Member Functions inherited from bio::physical::Class< Filterable >
	Class (Pointer< Filterable > object, Pointer< Symmetry > symmetry=NULL)

	Class (Pointer< Filterable > object, SymmetryFactory symmetryFactory)

	Class (const Class &other)

virtual Pointer< Filterable >	GetWaveObject ()

virtual Pointer< const Filterable >	GetWaveObject () const

virtual	operator Filterable & ()

virtual	operator const Filterable & () const

Pointer< Wave >	AsWave ()

Pointer< const Wave >	AsWave () const

virtual	operator Pointer< Wave > ()

Public Member Functions inherited from bio::chemical::Atom
	Atom ()

	Atom (const Atom &other)

virtual	~Atom ()

void	CloneBondsFrom (const Atom &other, BondClonePolicy policy=&Atom::DefaultBondClonePolicy)

Pointer< physical::Wave >	GetBonded (Valence position)

Pointer< const physical::Wave >	GetBonded (Valence position) const

Pointer< const physical::Wave >	ResolveBondedForReadById (AtomicNumber bondId) const

Pointer< physical::Wave >	ResolveBondedForWriteById (AtomicNumber bondId)

template<typename T >
Cow< T >	AsBonded () const

template<typename T >
Pointer< T >	AsBondedQuantum () const

template<typename T >
atom_detail::AsResultType< T, type::IsWaveImplementation< typenametype::RemovePointer< T >::Type >::sValue >::Type	As () const

template<typename T >
	operator T () const

template<typename T >
Valence	FormBond (T toBond, BondType type=bond_type::Unknown())

template<typename T >
bool	BreakBond (T toDisassociate, BondType type=bond_type::Unknown())

Valence	GetBondPosition (AtomicNumber bondedId) const

Valence	GetBondPosition (const Name &typeName) const

Valence	GetBondPositionLocked (AtomicNumber bondedId) const

template<typename T >
Valence	GetBondPosition () const

BondType	GetBondType (Valence position) const

template<typename T >
BondType	GetBondType () const

Pointer< Bonds >	GetAllBonds ()

Pointer< const Bonds >	GetAllBonds () const

void	ForEachBond (BondVisitor visitor, void *context=NULL) const

void	ForEachBondMutable (BondMutator mutator, void *context=NULL)

virtual Valence	FormBondImplementation (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type)

Valence	FormBondImplementation (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded)

Valence	FormBondImplementationLocked (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded)

virtual bool	BreakBondImplementation (AtomicNumber id, BondType type)

bool	BreakBondImplementationLocked (AtomicNumber id, BondType type)

Public Member Functions inherited from bio::physical::Class< Atom >
	Class (Pointer< Atom > object, Pointer< Symmetry > symmetry=NULL)

	Class (Pointer< Atom > object, SymmetryFactory symmetryFactory)

	Class (const Class &other)

virtual Pointer< Atom >	GetWaveObject ()

virtual Pointer< const Atom >	GetWaveObject () const

virtual	operator Atom & ()

virtual	operator const Atom & () const

Pointer< Wave >	AsWave ()

Pointer< const Wave >	AsWave () const

virtual	operator Pointer< Wave > ()

Public Member Functions inherited from bio::ThreadSafe
	ThreadSafe ()

	ThreadSafe (const ThreadSafe &toCopy)

ThreadSafe &	operator= (const ThreadSafe &toCopy)

	~ThreadSafe ()

void	LockThread () const

void	UnlockThread () const

void	LockMutexShared () const

void	UnlockMutexShared () const

Public Member Functions inherited from bio::chemical::Substance
	BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS_WITH_COMMON_CONSTRUCTOR (chemical, Substance, filter::Chemical()) Substance(const UnorderedMotif< Property > &properties

virtual	~Substance ()

virtual void	Enable ()

virtual void	Disable ()

virtual bool	IsEnabled () const

Public Member Functions inherited from bio::chemical::Class< Substance >
virtual Pointer< ::bio::physical::Wave >	Clone () const

Pointer< ::bio::physical::Wave >	AsWave ()

Pointer< const ::bio::physical::Wave >	AsWave () const

	operator Pointer< ::bio::physical::Wave > ()

virtual Pointer< ::bio::physical::Wave >	Modulate (Pointer< ::bio::physical::Wave > signal)

virtual Pointer< ::bio::physical::Wave >	Demodulate ()

virtual Pointer< const ::bio::physical::Wave >	Demodulate () const

virtual Pointer< ::bio::physical::Wave >	Superpose (const ::bio::physical::ConstWaves &displacement, Pointer< ::bio::physical::Interference > pattern)

virtual bool	Superpose (Pointer< const ::bio::physical::Wave > displacement, Pointer< ::bio::physical::Interference > pattern)

	Class (Pointer< Substance > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< Substance > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< Substance > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (const Class &other)

virtual bool	RegisterProperties (const Properties &properties)

virtual Properties	GetProperties () const

virtual Pointer< Atom >	AsAtom ()

virtual Pointer< const Atom >	AsAtom () const

virtual Code	Attenuate (Pointer< const physical::Wave > other)

virtual Code	Disattenuate (Pointer< const physical::Wave > other)

Public Member Functions inherited from bio::Covalent< UnorderedMotif< Property > >
	Covalent ()

	Covalent (const Covalent &other)

virtual	~Covalent ()

Covalent &	operator= (const Covalent &other)

Pointer< UnorderedMotif< Property > >	Object ()

Pointer< const UnorderedMotif< Property > >	Object () const

Public Member Functions inherited from bio::Covalent< UnorderedMotif< State > >
	Covalent ()

	Covalent (const Covalent &other)

virtual	~Covalent ()

Covalent &	operator= (const Covalent &other)

Pointer< UnorderedMotif< State > >	Object ()

Pointer< const UnorderedMotif< State > >	Object () const

Public Member Functions inherited from bio::chemical::Structure
	Structure ()

virtual	~Structure ()

Public Member Functions inherited from bio::chemical::UnorderedStructureInterface
	UnorderedStructureInterface ()

virtual	~UnorderedStructureInterface ()

template<typename T >
T	Add (const T t)

template<typename T >
Pointer< T >	Add (Pointer< T > t)

template<typename T >
Code	Remove (const T t)

template<typename T >
Code	Remove (Pointer< T > t)

template<typename T >
void	Import (Pointer< const UnorderedMotif< T > > other)

template<typename T >
void	Import (Pointer< const LinearMotif< T > > other)

template<typename T >
void	Import (const ::bio::Arrangement< T > &other)

Code	ImportAll (Pointer< const physical::Wave > other)

template<typename T >
Index	GetCount () const

template<typename T >
Pointer< Container >	GetAll ()

template<typename T >
Pointer< const Container >	GetAll () const

template<typename T >
bool	Has (T content) const

template<typename T >
bool	Has (Pointer< T > content) const

template<typename T >
unsigned int	GetNumMatching (Pointer< const Container > other) const

template<typename T >
bool	HasAll (Pointer< const Container > contents) const

template<typename T >
void	Clear ()

template<typename T >
std::string	GetStringFrom (std::string separator=", ")

template<typename T >
void	Log (const LogLevel &level=log_level::Info(), const Filter &filter=FilterPerspective::InvalidId())

Public Member Functions inherited from bio::chemical::LinearStructureInterface
	LinearStructureInterface ()

virtual	~LinearStructureInterface ()

template<typename T >
Code	Insert (typename LinearStructureRequest< T >::PointerType toAdd, const Position position=BOTTOM, const Id optionalPositionArg=0, const bool transferSubContents=false)

template<typename T >
LinearStructureRequest< T >::PointerType	GetById (const Id &id)

template<typename T >
const LinearStructureRequest< T >::PointerType	GetById (const Id &id) const

template<typename T >
LinearStructureRequest< T >::PointerType	GetByName (const Name &name)

template<typename T >
const LinearStructureRequest< T >::PointerType	GetByName (const Name &name) const

template<typename T >
LinearStructureRequest< T >::PointerType	GetOrCreateById (Id id)

template<typename T >
LinearStructureRequest< T >::PointerType	GetOrCreateByName (const Name &name)

template<typename T >
Code	RemoveById (const Id &id)

template<typename T >
Code	RemoveByName (const Name &name)

template<typename T >
LinearMotif< typenameLinearStructureRequest< T >::Pointee >::Contents	GetAllLike (Pointer< const Affinity > affinity) const

template<typename T >
Emission	ForEach (Pointer< ExcitationBase > excitation)

Public Member Functions inherited from bio::neural::DendriteProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE >
	BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS (molecular, DendriteProtein, filter::Neural()) virtual Code RecruitChaperones(Pointer< molecular

Pointer< SYNAPSE_TYPE >	ResolveDendriteLocal (Pointer< molecular::Vesicle > context, Pointer< PRESYNAPTIC_NEURON_TYPE > &postsynapticNeuron) const

Public Member Functions inherited from bio::molecular::Class< T >
	Class (Pointer< T > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< T > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< T > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

virtual	~Class ()

template<typename ENVIRONMENT >
void	SetEnvironment (Pointer< ENVIRONMENT > environment)

template<typename ENVIRONMENT >
Pointer< ENVIRONMENT >	GetEnvironment ()

template<typename ENVIRONMENT >
const Pointer< ENVIRONMENT >	GetEnvironment () const

Public Member Functions inherited from bio::neural::CallerDependentProtein< CALLER >
	BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS (molecular, CallerDependentProtein, filter::Neural()) virtual Code RecruitChaperones(Pointer< molecular

Public Member Functions inherited from bio::molecular::Class< CallerDependentProtein< CALLER > >
	Class (Pointer< CallerDependentProtein< CALLER > > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< CallerDependentProtein< CALLER > > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< CallerDependentProtein< CALLER > > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

virtual	~Class ()

void	SetEnvironment (Pointer< ENVIRONMENT > environment)

Pointer< ENVIRONMENT >	GetEnvironment ()

const Pointer< ENVIRONMENT >	GetEnvironment () const

Public Member Functions inherited from bio::molecular::Protein
	BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS_WITH_COMMON_CONSTRUCTOR (molecular, Protein, filter::Molecular()) virtual ~Protein()

virtual Code	RecruitChaperones (Pointer< Vesicle > environment)

virtual Code	Activate (Pointer< Vesicle > context=Pointer< Vesicle >())

virtual Code	operator() ()

virtual Code	operator() (Pointer< Vesicle > context)

virtual Pointer< const DNA >	GetSource () const

virtual Code	SetSource (Pointer< const DNA > source)

Public Member Functions inherited from bio::molecular::Class< Protein >
	Class (Pointer< Protein > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< Protein > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< Protein > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

virtual	~Class ()

void	SetEnvironment (Pointer< ENVIRONMENT > environment)

Pointer< ENVIRONMENT >	GetEnvironment ()

const Pointer< ENVIRONMENT >	GetEnvironment () const

Public Member Functions inherited from bio::Covalent< chemical::LinearMotif< Protein > >
	Covalent ()

	Covalent (const Covalent &other)

virtual	~Covalent ()

Covalent &	operator= (const Covalent &other)

Pointer< chemical::LinearMotif< Protein > >	Object ()

Pointer< const chemical::LinearMotif< Protein > >	Object () const

Public Member Functions inherited from bio::chemical::EnvironmentDependent< Vesicle >
	EnvironmentDependent (EnvironmentPointer environment=NULL)

virtual	~EnvironmentDependent ()

virtual EnvironmentPointer	GetEnvironment ()

virtual const EnvironmentPointer	GetEnvironment () const

virtual void	SetEnvironment (EnvironmentPointer environment)

Public Member Functions inherited from bio::molecular::Molecule
	BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS_WITH_COMMON_CONSTRUCTOR (molecular, Molecule, filter::Molecular()) Molecule(const Molecule &toCopy)

virtual	~Molecule ()

template<typename T >
Id	Use (const Name &varName, Pointer< T > varPtr)

template<typename T >
Id	Use (const Id &id, Pointer< T > varPtr)

Id	Define (const Name &varName)

Id	Define (const Id &id)

template<typename T >
Id	Define (const Name &varName)

template<typename T >
Id	Define (const Id &id)

template<typename T >
Id	Define (const Name &varName, const T &assignment)

template<typename T >
Id	Define (const Id &id, const T &assignment)

virtual Pointer< Surface >	RotateTo (const Id &surfaceId)

virtual Pointer< const Surface >	RotateTo (const Id &surfaceId) const

virtual Pointer< Surface >	RotateTo (const Name &surfaceName)

virtual Pointer< const Surface >	RotateTo (const Name &surfaceName) const

virtual Pointer< Surface >	RotateToOrDefine (const Id &surfaceId)

Pointer< Surface >	RotateToOrDefine (const Name &surfaceName)

template<typename T >
Pointer< Surface >	RotateToOrDefine (const Id &surfaceId, T &assignment)

template<typename T >
Pointer< Surface >	RotateToOrDefine (const Name &surfaceName, T &assignment)

virtual bool	DuplicateFrom (Pointer< Molecule > source, const Name &surface)

virtual bool	TransferFrom (Pointer< Molecule > source, const Name &surface)

virtual Pointer< const physical::Symmetry >	Spin () const

virtual Code	Reify (Pointer< const physical::Symmetry > symmetry)

virtual Pointer< Surface >	operator() (const Id &surfaceId)

virtual Pointer< const Surface >	operator() (const Id &surfaceId) const

template<typename T >
Pointer< Surface >	operator() (const Id &surfaceId)

virtual Pointer< Surface >	operator() (const Name &name)

virtual Pointer< const Surface >	operator() (const Name &name) const

template<typename T >
Pointer< Surface >	operator() (const Name &surfaceName)

virtual Pointer< Molecule >	operator<< (Pointer< Surface > source)

virtual Pointer< Surface >	operator>> (Pointer< Surface > target)

virtual Pointer< Molecule >	operator<< (Pointer< Molecule > source)

virtual Pointer< Molecule >	operator>> (Pointer< Molecule > target)

Public Member Functions inherited from bio::molecular::Class< Molecule >
	Class (Pointer< Molecule > object, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< Molecule > object, const Name &name, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

	Class (Pointer< Molecule > object, const Id &id, Filter filter=filter::Default(), SymmetryType symmetryType=symmetry_type::Object())

virtual	~Class ()

void	SetEnvironment (Pointer< ENVIRONMENT > environment)

Pointer< ENVIRONMENT >	GetEnvironment ()

const Pointer< ENVIRONMENT >	GetEnvironment () const

Public Member Functions inherited from bio::Metallic< chemical::DependentMotif< Surface, Molecule > >
	Metallic ()

	Metallic (const Metallic &other)

virtual	~Metallic ()

Metallic &	operator= (const Metallic &other)

Pointer< chemical::DependentMotif< Surface, Molecule > >	Object ()

Pointer< const chemical::DependentMotif< Surface, Molecule > >	Object () const

Public Member Functions inherited from bio::neural::AxonProtein< SYNAPSE_TYPE, POSTSYNAPTIC_NEURON_TYPE >
	BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS (molecular, AxonProtein, filter::Neural()) virtual Code RecruitChaperones(Pointer< molecular

Pointer< SYNAPSE_TYPE >	ResolveAxonLocal (Pointer< molecular::Vesicle > context, Pointer< POSTSYNAPTIC_NEURON_TYPE > &presynapticNeuron) const

Additional Inherited Members
Public Types inherited from bio::physical::Identifiable< Id >
typedef Id	Identifier

typedef Arrangement< Identifier >	Ids

Public Types inherited from bio::physical::Observer< PERSPECTIVE >
typedef PERSPECTIVE	Perspective

Public Types inherited from bio::chemical::Atom
typedef BondCloneAction(*	BondClonePolicy) (const Bond &bond)

typedef void(*	BondVisitor) (const Bond &bond, void *context)

typedef BondCloneAction(*	BondMutator) (Bond &bond, void *context)

Public Types inherited from bio::chemical::EnvironmentDependent< Vesicle >
typedef type::RemovePointer< Vesicle >::Type	EnvironmentType

typedef Pointer< EnvironmentType >	EnvironmentPointer

Static Public Member Functions inherited from bio::physical::Class< T >
static Pointer< T >	Convert (Pointer< Wave > wave)

Static Public Member Functions inherited from bio::physical::Wave
static Properties	GetResonanceBetween (ConstWaves waves)

static Properties	GetResonanceBetween (Pointer< const Wave > wave1, Pointer< const Wave > wave2)

static Properties	GetResonanceBetween (Pointer< const Wave > wave, const Properties &properties)

Static Public Member Functions inherited from bio::log::Writer
static void	Log (Pointer< const Writer > writer, LogLevel level, const char *format,...)

static bool	ShouldLog (Pointer< const Writer > writer, LogLevel level)

Static Public Member Functions inherited from bio::physical::Class< Writer >
static Pointer< Writer >	Convert (Pointer< Wave > wave)

Static Public Member Functions inherited from bio::physical::Class< Filterable >
static Pointer< Filterable >	Convert (Pointer< Wave > wave)

Static Public Member Functions inherited from bio::chemical::Atom
static BondCloneAction	DefaultBondClonePolicy (const Bond &bond)

template<typename T >
static AtomicNumber	GetBondId ()

Static Public Member Functions inherited from bio::physical::Class< Atom >
static Pointer< Atom >	Convert (Pointer< Wave > wave)

Static Public Member Functions inherited from bio::chemical::UnorderedStructureInterface
static void	ImportAllCollectVisitor (const chemical::Bond &bond, void *ctx)

Static Public Member Functions inherited from bio::Metallic< chemical::DependentMotif< Surface, Molecule > >
static void	DonateCollectVisitor (const chemical::Bond &bond, void *ctx)

static void	DonateBonds (Pointer< chemical::Atom > donor, Pointer< chemical::Atom > receiver)

static void	BreakDonatedCollectVisitor (const chemical::Bond &bond, void *ctx)

static void	BreakDonatedBonds (Pointer< chemical::Atom > receiver)

static BondType	GetBondType ()

Public Attributes inherited from bio::chemical::Substance
const UnorderedMotif< State > &	states

Protected Types inherited from bio::physical::Identifiable< Id >
typedef Id	Identifier

typedef Arrangement< Identifier >	Ids

Protected Types inherited from bio::physical::Observer< PERSPECTIVE >
typedef PERSPECTIVE	Perspective

Protected Types inherited from bio::chemical::Atom
typedef BondCloneAction(*	BondClonePolicy) (const Bond &bond)

typedef void(*	BondVisitor) (const Bond &bond, void *context)

typedef BondCloneAction(*	BondMutator) (Bond &bond, void *context)

Protected Member Functions inherited from bio::chemical::Elementary< T >
void	RegisterType ()

	Elementary (const Properties properties)

	Elementary ()

virtual	~Elementary ()

Protected Member Functions inherited from bio::physical::Identifiable< Id >
virtual void	InitializeImplementation (ByteStreams &args)

friend::std::ostream &	operator<< (std::ostream &out, const Identifiable< Id > &t)

	Identifiable (Pointer< Perspective< Id > > perspective=NULL)

	Identifiable (const Name &name, Pointer< Perspective< Id > > perspective=NULL)

	Identifiable (Identifier id, Pointer< Perspective< Id > > perspective=NULL)

	Identifiable (const Identifiable &other)

virtual	~Identifiable ()

virtual	operator Id () const

virtual bool	operator== (const Identifier id) const

virtual bool	operator== (const Name &name) const

virtual bool	operator== (const Identifiable< Id > &other) const

virtual Name	GetName () const

virtual Identifier	GetId () const

virtual bool	SetName (const Name &name)

virtual bool	SetId (Identifier id)

virtual bool	IsName (const Name &name) const

virtual bool	IsNameInsensitive (const Name &name) const

virtual bool	IsId (Identifier id) const

virtual void	SetPerspective (Pointer< Perspective< Id > > perspective)

Protected Member Functions inherited from bio::physical::Observer< PERSPECTIVE >
	Observer (Pointer< Perspective > perspective=NULL)

	Observer (const Observer &other)

virtual	~Observer ()

virtual void	SetPerspective (Pointer< Perspective > perspective)

virtual Pointer< Perspective >	GetPerspective () const

Protected Member Functions inherited from bio::VirtualBase
	VirtualBase ()

virtual	~VirtualBase ()

void	Initialize (ByteStreams &args)

void	Initialize (ByteStream arg1)

void	Initialize (ByteStream arg1, ByteStream arg2)

void	Initialize (ByteStream arg1, ByteStream arg2, ByteStream arg3)

Protected Member Functions inherited from bio::log::Writer
	Writer ()

	Writer (Filter logFilter)

virtual	~Writer ()

virtual Pointer< const Writer >	AsLogWriter () const

bool	IsEnabled (LogLevel level) const

virtual void	Log (LogLevel level, const char *format, va_list args) const

Protected Member Functions inherited from bio::physical::Class< Writer >
	Class (Pointer< Writer > object, Pointer< Symmetry > symmetry=NULL)

	Class (Pointer< Writer > object, SymmetryFactory symmetryFactory)

	Class (const Class &other)

virtual Pointer< Writer >	GetWaveObject ()

virtual Pointer< const Writer >	GetWaveObject () const

virtual	operator Writer & ()

virtual	operator const Writer & () const

Pointer< Wave >	AsWave ()

Pointer< const Wave >	AsWave () const

virtual	operator Pointer< Wave > ()

Protected Member Functions inherited from bio::physical::Filterable
	Filterable ()

	Filterable (Filter filter)

virtual	~Filterable ()

virtual void	InitializeImplementation (ByteStreams &args)

virtual void	SetFilter (Filter filter)

Filter	GetFilter () const

Protected Member Functions inherited from bio::physical::Class< Filterable >
	Class (Pointer< Filterable > object, Pointer< Symmetry > symmetry=NULL)

	Class (Pointer< Filterable > object, SymmetryFactory symmetryFactory)

	Class (const Class &other)

virtual Pointer< Filterable >	GetWaveObject ()

virtual Pointer< const Filterable >	GetWaveObject () const

virtual	operator Filterable & ()

virtual	operator const Filterable & () const

Pointer< Wave >	AsWave ()

Pointer< const Wave >	AsWave () const

virtual	operator Pointer< Wave > ()

Protected Member Functions inherited from bio::chemical::Atom
void	IndexBond (AtomicNumber bondedId, Valence position)

void	UnindexBond (AtomicNumber bondedId)

	Atom ()

	Atom (const Atom &other)

virtual	~Atom ()

void	CloneBondsFrom (const Atom &other, BondClonePolicy policy=&Atom::DefaultBondClonePolicy)

Pointer< physical::Wave >	GetBonded (Valence position)

Pointer< const physical::Wave >	GetBonded (Valence position) const

Pointer< const physical::Wave >	ResolveBondedForReadById (AtomicNumber bondId) const

Pointer< physical::Wave >	ResolveBondedForWriteById (AtomicNumber bondId)

template<typename T >
Cow< T >	AsBonded () const

template<typename T >
Pointer< T >	AsBondedQuantum () const

template<typename T >
atom_detail::AsResultType< T, type::IsWaveImplementation< typenametype::RemovePointer< T >::Type >::sValue >::Type	As () const

template<typename T >
	operator T () const

template<typename T >
Valence	FormBond (T toBond, BondType type=bond_type::Unknown())

template<typename T >
bool	BreakBond (T toDisassociate, BondType type=bond_type::Unknown())

Valence	GetBondPosition (AtomicNumber bondedId) const

Valence	GetBondPosition (const Name &typeName) const

Valence	GetBondPositionLocked (AtomicNumber bondedId) const

template<typename T >
Valence	GetBondPosition () const

BondType	GetBondType (Valence position) const

template<typename T >
BondType	GetBondType () const

Pointer< Bonds >	GetAllBonds ()

Pointer< const Bonds >	GetAllBonds () const

void	ForEachBond (BondVisitor visitor, void *context=NULL) const

void	ForEachBondMutable (BondMutator mutator, void *context=NULL)

virtual Valence	FormBondImplementation (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type)

Valence	FormBondImplementation (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded)

Valence	FormBondImplementationLocked (Pointer< physical::Wave > toBond, AtomicNumber id, BondType type, bool ownsBonded)

virtual bool	BreakBondImplementation (AtomicNumber id, BondType type)

bool	BreakBondImplementationLocked (AtomicNumber id, BondType type)

Protected Member Functions inherited from bio::physical::Class< Atom >
	Class (Pointer< Atom > object, Pointer< Symmetry > symmetry=NULL)

	Class (Pointer< Atom > object, SymmetryFactory symmetryFactory)

	Class (const Class &other)

virtual Pointer< Atom >	GetWaveObject ()

virtual Pointer< const Atom >	GetWaveObject () const

virtual	operator Atom & ()

virtual	operator const Atom & () const

Pointer< Wave >	AsWave ()

Pointer< const Wave >	AsWave () const

virtual	operator Pointer< Wave > ()

Protected Member Functions inherited from bio::ThreadSafe
	ThreadSafe ()

	ThreadSafe (const ThreadSafe &toCopy)

ThreadSafe &	operator= (const ThreadSafe &toCopy)

	~ThreadSafe ()

void	LockThread () const

void	UnlockThread () const

void	LockMutexShared () const

void	UnlockMutexShared () const

Protected Member Functions inherited from bio::chemical::LinearStructureInterface
template<typename T >
Pointer< LinearMotif< T > >	ResolveLinearMotif ()

template<typename T >
Pointer< const LinearMotif< T > >	ResolveLinearMotif () const

Protected Member Functions inherited from bio::neural::CallerDependentProtein< CALLER >
Pointer< CALLER >	ResolveCallerLocal (Pointer< molecular::Vesicle > context) const

Protected Member Functions inherited from bio::molecular::Protein
Code	ValidateActivationContext (Pointer< Vesicle > context) const

Static Protected Member Functions inherited from bio::log::Writer
static void	Log (Pointer< const Writer > writer, LogLevel level, const char *format,...)

static bool	ShouldLog (Pointer< const Writer > writer, LogLevel level)

Static Protected Member Functions inherited from bio::physical::Class< Writer >
static Pointer< Writer >	Convert (Pointer< Wave > wave)

Static Protected Member Functions inherited from bio::physical::Class< Filterable >
static Pointer< Filterable >	Convert (Pointer< Wave > wave)

Static Protected Member Functions inherited from bio::chemical::Atom
static BondCloneAction	DefaultBondClonePolicy (const Bond &bond)

template<typename T >
static AtomicNumber	GetBondId ()

Static Protected Member Functions inherited from bio::physical::Class< Atom >
static Pointer< Atom >	Convert (Pointer< Wave > wave)

Protected Attributes inherited from bio::physical::Class< T >
Pointer< T >	mObject

Protected Attributes inherited from bio::physical::Wave
LazyPointer< Symmetry >	mSymmetry

bool	mHasSignal

uint16_t	mTypeId

Protected Attributes inherited from bio::VirtualBase
bool	mHasBeenInitialized

Protected Attributes inherited from bio::physical::Class< Writer >
Pointer< Writer >	mObject

Protected Attributes inherited from bio::physical::Filterable
Filter	mFilter

Protected Attributes inherited from bio::physical::Class< Filterable >
Pointer< Filterable >	mObject

Protected Attributes inherited from bio::chemical::Atom
Bonds	mBonds

::std::map< AtomicNumber, Valence >	mBondIndex

Arrangement< Pointer< const physical::Wave > >	mBackflowPreventer

Protected Attributes inherited from bio::physical::Class< Atom >
Pointer< Atom >	mObject

Protected Attributes inherited from bio::Covalent< UnorderedMotif< Property > >
Pointer< UnorderedMotif< Property > >	mT

Protected Attributes inherited from bio::Covalent< UnorderedMotif< State > >
Pointer< UnorderedMotif< State > >	mT

Protected Attributes inherited from bio::neural::DendriteProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE >
Pointer< PRESYNAPTIC_NEURON_TYPE >	mPostsynapticNeuron

Protected Attributes inherited from bio::neural::CallerDependentProtein< CALLER >
Pointer< CALLER >	mCaller

Protected Attributes inherited from bio::molecular::Protein
Pointer< const DNA >	mSource

Protected Attributes inherited from bio::Covalent< chemical::LinearMotif< Protein > >
Pointer< chemical::LinearMotif< Protein > >	mT

Protected Attributes inherited from bio::chemical::EnvironmentDependent< Vesicle >
EnvironmentPointer	mEnvironment

Protected Attributes inherited from bio::Metallic< chemical::DependentMotif< Surface, Molecule > >
Pointer< chemical::DependentMotif< Surface, Molecule > >	mT

Protected Attributes inherited from bio::neural::AxonProtein< SYNAPSE_TYPE, POSTSYNAPTIC_NEURON_TYPE >
Pointer< POSTSYNAPTIC_NEURON_TYPE >	mPresynapticNeuron

Member Function Documentation

◆ BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS()

template<class SYNAPSE_TYPE , class PRESYNAPTIC_NEURON_TYPE , class POSTSYNAPTIC_NEURON_TYPE >

bio::neural::SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE >::BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS	(	molecular	,
		SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE >	,
		filter::Neural()
	)

inline

Disambiguate all class methods.
Protein method; see that class for details.

Parameters

environment Vesicle to Recruit Chaperones from.

Returns: Success() if *this is ready to Fold()

◆ Fold()

template<class SYNAPSE_TYPE , class PRESYNAPTIC_NEURON_TYPE , class POSTSYNAPTIC_NEURON_TYPE >

virtual Code bio::neural::SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE >::Fold ( )

inlinevirtual

Protein method; see that class for details.

Returns: Success if *this is ready to Activate()

Reimplemented from bio::neural::DendriteProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE >.

◆ ResolveCaller()

template<class SYNAPSE_TYPE , class PRESYNAPTIC_NEURON_TYPE , class POSTSYNAPTIC_NEURON_TYPE >

virtual Pointer< SYNAPSE_TYPE > bio::neural::SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE >::ResolveCaller ( Pointer< molecular::Vesicle > context )

inlinevirtual

Per-call refresh of the caller AND BOTH derived neurons.
DendriteProtein and AxonProtein each override ResolveCaller over the
shared virtual CallerDependentProtein< SYNAPSE_TYPE > base, so without
this override the final override would be ambiguous and only one side
would refresh for a shared SynapseProtein. We resolve the caller exactly
once through the shared base, then recompute BOTH the postsynaptic and
presynaptic neurons from that single resolved caller, mirroring the two
base Fold() derivations. A NULL or non-SYNAPSE_TYPE context keeps the
cached bindings.

Parameters

context the Vesicle Activating *this (may be NULL).

Returns: the resolved (or cached) caller.

Reimplemented from bio::neural::DendriteProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE >.

◆ ResolveSynapseLocal()

template<class SYNAPSE_TYPE , class PRESYNAPTIC_NEURON_TYPE , class POSTSYNAPTIC_NEURON_TYPE >

Pointer< SYNAPSE_TYPE > bio::neural::SynapseProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE, POSTSYNAPTIC_NEURON_TYPE >::ResolveSynapseLocal	(	Pointer< molecular::Vesicle >	context,
		Pointer< PRESYNAPTIC_NEURON_TYPE > &	postsynapticNeuron,
		Pointer< POSTSYNAPTIC_NEURON_TYPE > &	presynapticNeuron
	)		const

inline

Member-free counterpart to ResolveCaller: resolves the per-call caller
once through the shared base and derives BOTH neurons into caller-owned
locals, WITHOUT writing mCaller / mPostsynapticNeuron / mPresynapticNeuron.
This is the helper for the parallel cortex: when one SynapseProtein is
SHARED across N synapses and ticks go concurrent, the three member writes
in ResolveCaller race; resolving into the caller's stack locals removes
the race entirely. A NULL or non-SYNAPSE_TYPE context falls back to the
cached caller (read-only) and leaves both out neurons untouched, so the
out args mirror the existing member bindings 1:1 — a migrating override
substitutes this->mPostsynapticNeuron/this->mPresynapticNeuron/
this->mCaller with these locals. Non-virtual, additive — ABI-safe.
NOTE on the out-arg types (deliberate, mirrors the base members): the
postsynaptic out is PRESYNAPTIC_NEURON_TYPE* because SynapseProtein binds
DendriteProtein< SYNAPSE_TYPE, PRESYNAPTIC_NEURON_TYPE >, whose
mPostsynapticNeuron member is PRESYNAPTIC_NEURON_TYPE*; symmetrically the
presynaptic out is POSTSYNAPTIC_NEURON_TYPE*. The arg NAMES track the
members (and getters) they replace.

Parameters

context	the Vesicle Activating *this (may be NULL).
postsynapticNeuron	out: GetPostsynapticNeuron() of the resolved caller (set only when a caller resolves).
presynapticNeuron	out: GetPresynapticNeuron() of the resolved caller (set only when a caller resolves).

Returns: the per-call (or cached) caller, without mutating *this.

The documentation for this class was generated from the following file:

SynapseProtein.h

Public Member Functions

Additional Inherited Members

Member Function Documentation

◆ BIO_DEFAULT_IDENTIFIABLE_CONSTRUCTORS()

◆ Fold()

◆ ResolveCaller()

◆ ResolveSynapseLocal()